Table 1.
Putative SAV7471 target genes involved in pantetheine and CoA metabolism
| Gene | Function | Nucleotide positiona |
PWM scoreb | Sequence | ATG distancec | |
|---|---|---|---|---|---|---|
| Start | End | |||||
| fadD3 (SAV1104) | Putative acyl-CoA synthetase, long-chain fatty acid-CoA ligase | 1388188 | 1388203 | 2 | GAGATCGACGGTGCTC | 43 |
| icmB (SAV3460) | Putative isobutyryl-CoA mutase, chain B | 4289699 | 4289714 | 2 | GATAACGTTCGTTCAC | 71 |
| coaD (SAV2669) | Putative pantetheine-phosphate adenylyltransferase | 3271874 | 3271889 | 3 | GAGAGCGAGGGACCTC | 3 |
| fadA1 (SAV2856) | Putative acetoacetyl-CoA thiolase | 3499879 | 3499894 | 3 | GTAAACCCTCGTTCAC | 38 |
| acsA1 (SAV4599) | Putative acetyl-CoA synthetase | 5615830 | 5615845 | 3 | GAGAACGTGTGGCCCC | 125 |
| fadD5 (SAV1258) | Putative acyl-CoA synthetase, long-chain fatty acid-CoA ligase | 1562606 | 1562621 | 4 | CAGTACGTGTGGTCCC | 107 |
| fadC1 (SAV1909) | Putative 3-hydroxyacyl-CoA dehydrogenase | 2335402 | 2335417 | 4 | GAGTGCGGGTGTTGCC | 84 |
| fadC1 (SAV1909) | Putative 3-hydroxyacyl-CoA dehydrogenase | 2335450 | 2335465 | 4 | GCGCACGCGGGTGCGC | 36 |
a
Genomic position. All sequences are minus strands.
b
Number of mismatches with respect to the consensus. PWM, positive weight matrix.
c
Values are distances (in nucleotides) to the predicted start codon of the downstream gene.