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. Author manuscript; available in PMC: 2013 Oct 25.
Published in final edited form as: J Mol Biol. 2011 Oct 15;414(4):10.1016/j.jmb.2011.10.016. doi: 10.1016/j.jmb.2011.10.016

Table 1.

Application of the sampling method using inter-helical Cβ distances from experimentally determined helical TM structures

Name Oligomer PDB ID Residues RMSDScore RMSDMin RMSDNative
GpA Dimer 1AFO 73–96 1.7 1.4 0.1
EphA1 Dimer 2K1L 549–560 1.3 1.0 0.2
BNIP3 Dimer 2KA2 170–184 0.9 0.9 0.3
M2(xtal) Tetramer 3LBW 26–43 1.4 1.4 1.4
M2(NMR) Tetramer 2RLF 26–43 1.5 1.2 0.1
M2(ssNMR1) Tetramer 2KQT 26–43 1.3 1.2 0.0
M2(ssNMR2) Tetramer 2LOJ 26–43 1.5 1.2 0.2
BM2 Tetramer 2KIX 7–25 2.0 1.6 0.6
Phospholamban Pentamer 1ZLL 37–52 2.9 0.9 0.3