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. 2013 Oct 25;8(10):e78571. doi: 10.1371/journal.pone.0078571

Table 5. Sequencing and taxonomic affiliation of the excised bands from the DGGE gels of sediment bacterial and fungal species in the Zhou cun drinking water reservoir, eastern China.

Band name Sequence size (bp) Accession no. Closest related organism in the database (accession no.) Similarity (%) Taxonomic affiliation (LCA Tax. SILVA)
B1 172 KC775759 Uncultured bacterium isolate 16S ribosomal RNA gene, partial sequence (GU224074.1) 100 Ruminococcaceae
B2 174 KC775760 Uncultured bacterium clone S89 16S ribosomal RNA gene, partial sequence (JX220059.1) 100 Cyanobacteria
B3 162 KC775761 Uncultured bacterium clone S89 16S ribosomal RNA gene, partial sequence (JX220059.1) 97 Cyanobacteria
B4 170 KC775757 Uncultured Chloroflexi bacterium clone G279 16S ribosomal RNA gene, partial sequence (HQ162767.1) 99 Chloroflexi
B5 160 KC775762 Comamonas sp. AS-8 16S ribosomal RNA gene, partial sequence (KC013936.1) 100 Comamonas sp.
B6 160 KC775763 Uncultured bacterium clone OTU-X4-16 16S ribosomal RNA gene, partial sequence (JQ668617.1) 100 Syntrophus sp.
B7 161 KC775764 Uncultured bacterium isolate DGGE gel band S16 16S ribosomal RNA gene, partial sequence (HM118837.1) 99 Deltaproteobacteria
B8 157 KC775765 Uncultured bacterium clone HFMBR bac1-2 16S ribosomal RNA gene, partial sequence (JX853187.1) 100 Clostridium sp.
F1 265 KC775766 Uncultured fungus clone KV11a-28-D04 18S ribosomal RNA gene (JX844781.1) 98 Pezizales
F2 276 KC775767 Uncultured fungus clone ITS1-67 18S ribosomal RNA gene (JX915388.1) 100 Glomeromycota
F3 240 KC775768 Alternaria alternata TC0811057 18S ribosomal RNA gene (HM013816.1) 100 Deuteromycotina
F4 214 KC775758 Uncultured soil fungus clone BD9 18S ribosomal RNA gene (JQ666632.1) 100 Rhizophydium sp.
F5 216 KC775769 Rhizophydium sp. JEL-223 (DQ485617.1) 100 Rhizidiaceae
F6 266 KC775770 Allomyces macrogynus (JN943673.1) 92 Blastocladiales