Table 5.

Novel miRNAs and their transcript abundance identified from CK and Cd200 sRNA libraries in radish

miRNA	Mature sequence (5′–3′)	Size	LP	MFE	miRNA reads		Log2 (Cd200/CK)	Total miRNA reads	Total miRNA* reads	Loci
					CK	Cd200
rsa-miRn1	UCGCUUGGUGCAGGUCGGGAA	21	141	–72.20	8263	9468	0.42	17731	199	1
rsa-miRn2	UGAAGCUGCCAGCAUGAUCUA	21	118	–48.00	1524	4358	1.74	5882	16	1
rsa-miRn3	AAGCUAGAGACUUAAAACAAG	21	139	–23.95	65	8	–2.80	73	19	1
rsa-miRn4	GCGUAUGAGGAGCCAAGCAUA	21	106	–49.30	1045	574	–0.64	1619	168	1
rsa-miRn5	GUGGUGACGGUGGUGGUGCGA	21	99	–36.40	5	0	–8.31	5	1	2
rsa-miRn6	CAGGGAACAAGCAGAGCAUGG	21	110	–46.10	3972	2741	–0.31	6713	1557	1
rsa-miRn7	AUAUACUGAAGUUUAUACUCU	21	208	–37.00	58	362	2.87	420	36	1
rsa-miRn8	GUAUGAGGAGCCAAGCAUAU	21	107	–46.60	1137	563	–0.79	1700	198	1
rsa-miRn9	GUACGACGAAGAUGAGCCGACA	23	110	–19.60	36	25	–0.30	61	5	3
rsa-miRn10	UGGAGGCAGCGGUUCAUCGAUC	22	140	–45.70	378	452	0.48	830	2370	1
rsa-miRn11	GCUCAAGAAAGCUGUGGGAAA	21	147	–39.04	0	242	14.18	242	72	1
rsa-miRn12	AAACUGCCUAAACAAACAUAUC	22	171	–40.44	56	38	–11.87	59	14	1
rsa-miRn13	GCUGGAGGCAGCGGUUCAUCGAUC	23	142	–46.80	827	2326	1.72	3153	300	1
rsa-miRn14	AGAUGACAGUGAGGCUUCUUA	21	108	–18.20	0	28	11.02	28	1	4
rsa-miRn15	CCCGCCUUGCAUCAACUGAAU	21	137	–66.30	222	34	–2.48	256	19	1
rsa-miRn16	UCGCUUGGUGCAGGUCGGGAC	21	142	–73.60	12154	14602	1.31	37886	3276	1
rsa-miRn17	UUGGACUGAAGGGAGCUCCUU	21	201	–86.70	8	0	–8.99	8	1	1
rsa-miRn18	CGCCUUGCAUCAACUGAAUCA	21	108	–56.70	1721	1423	1.71	6544	170	1
rsa-miRn19	AUGGAUGUAUGAUAUGAUGGA	21	136	–41.40	0	21	10.60	21	3	1
rsa-miRn20	GGAAUGUUGUUUGGCUCGAAG	21	72	–20.00	10	27	1.66	37	1	1
rsa-miRn21	UCGGACCAGGCUUCAUUCCCC	21	133	–67.20	36853	53357	0.76	90210	436	1
rsa-miRn22	AAGCUGCCAGCGUGAUCUUAAC	22	101	–41.80	2638	3280	0.54	5918	2018	1

LP (nt), The length of precursor; MFE (kcal mol^–1), minimal folding free energy.