Table 7.
Identified targets for known Cd-responsive miRNAs in radish
| miRNA | Target ID | Cleavage site | Category | TP100M | Score | Target annotation |
|---|---|---|---|---|---|---|
| miR156 | Contig20162 | 111 | I | 22.562 | 1 | Squamosa promoter-binding protein |
| Contig44431 | 487 | I | 16.338 | 1 | Squamosa promoter-binding protein | |
| Contig27694 | 126 | I | 49.403 | 3 | Glutathione S-transferase 5 (GST5) | |
| miR157 | Rsa#S42048961 | 357 | II | 119.034 | 2 | Squamosa promoter-binding protein |
| miR158 | EV566868 | 183 | I | 33.065 | 4 | Bax inhibitor-like protein |
| miR159 | EY896930 | 325 | I | 192.166 | 3 | MYB family transcription factor |
| Rsa#S42022839 | 268 | III | 31.898 | 3 | MYB family transcription factor | |
| Contig31028 | 106 | I | 48.236 | 2.5 | ABC transporter family protein | |
| miR166 | CL14723.Contig4 | 798 | I | 153.655 | 2.5 | HD-ZIP transcription factor |
| CL2282.Contig1 | 888 | I | 23.729 | 3 | Ring zinc finger protein | |
| CL3287.Contig3 | 798 | I | 23.729 | 2.5 | Iron transporter protein | |
| CL528.Contig1 | 699 | I | 23.729 | 2.5 | Homeodomain-leucine zipper protein | |
| CL7584.Contig4 | 888 | II | 23.729 | 2.5 | Leucine-rich repeat (LRR) domain-containing proteins | |
| CL14723.Contig1 | 663 | I | 243.903 | 2.5 | Peptide chain release factor subunit | |
| CL2282.Contig8 | 681 | I | 23.729 | 3 | Unknown protein | |
| miR169 | EX750227 | 370 | II | 12.448 | 3 | AP2 domain-containing transcription factor |
| CL4257 | 256 | I | 27.23 | 2.5 | CCAAT-binding transcription factor | |
| Contig7182 | 82 | I | 56.794 | 3 | CCAAT-binding transcription factor | |
| miR393 | Contig26439 | 256 | I | 222.508 | 2 | Phytochelatin synthase 1 |
| miR396 | CL8017.Contig3 | 445 | I | 16.727 | 3.5 | Auxin response factor 8 (ARF8) |
| Contig132627 | 136 | III | 45.124 | 3.5 | Heat shock protein 90 | |
| Unigene34651 | 136 | III | 45.124 | 3.5 | Uncharacterized protein | |
| FD946893 | 185 | I | 27.23 | 3.5 | Hypothetical protein | |
| Unigene23674 | 490 | I | 17.894 | 4 | Drought-stressed protein | |
| FD986768 | 531 | III | 17.894 | 4 | Drought-stressed protein | |
| FY448028 | 648 | II | 16.727 | 3.5 | Uncharacterized protein | |
| CL8017.Contig1 | 725 | I | 16.727 | 2.5 | Transmembrane protein-related | |
| miR408 | Unigene1805 | 426 | II | 33.454 | 3 | Ascorbate oxidase |
| Contig13527 | 78 | I | 33.454 | 2.5 | Auxin response factor 6(ARF6) | |
| miR827 | EY923470 | 114 | II | 24.896 | 1.5 | Ring finger family protein |
| miR2111 | EV552506 | 301 | II | 19.061 | 4 | 60S ribosomal protein L26-1 |
Detailed information of targets for all the known miRNAs cab be found in Supplementary Table S6 at JXB online.
Categories are defined according to Addo-Quaye et al. (2008).
Cleavage site, nucleotide number from the 5′ end of cDNA; TP100M, transcripts per 100 million.