Table 8.
Candidate targets for novel Cd-responsive miRNAs in radish
| miRNA | Target ID | Cleavage site | Category | TP100M | Score | Target annotation |
|---|---|---|---|---|---|---|
| rsa-miRn1 | Contig19272 | 733 | I | 18.234 | 4 | Auxin response factor 16 (ARF16) |
| CL2405.Contig1 | 113 | I | 18.234 | 4 | Auxin response factor16 (ARF16) | |
| rsa-miRn3 | Contig81072 | 75 | II | 35.628 | 2.5 | Protein–protein interaction domain family protein |
| Contig11248 | 461 | II | 35.628 | 2.5 | Protein–protein interaction domain family protein | |
| rsa-miRn4 | Unigene18150 | 158 | I | 21.792 | 3 | Zinc finger-containing protein |
| rsa-miRn8 | Contig23480 | 856 | I | 31.56 | 3.5 | MYB family transcription factor |
| Contig21929 | 12 | II | 31.56 | 3.5 | MYB family transcription factor | |
| Unigene24462 | 334 | II | 31.56 | 3.5 | Leucine-rich repeat (LRR) domain-containing proteins | |
| rsa-miRn10 | CL10523.Contig1 | 126 | I | 10.862 | 3 | AP2 domain-containing transcription factor |
| rsa-miRn11 | Unigene17426 | 62 | I | 45.68 | 3.5 | Disease resistance protein |
| rsa-miRn13 | CL1028.Contig2 | 215 | III | 19.824 | 3 | CCAAT-binding transcription factor |
| Contig2969 | 83 | I | 19.824 | 3 | Uncharacterized protein | |
| rsa-miRn17 | Unigene13282 | 256 | II | 106.52 | 1 | Cold-inducible plasma membrane protein |
| rsa-miRn19 | Contig10826 | 32 | I | 86.583 | 4 | Zinc finger-containing protein |
| Unigene2104 | 306 | I | 86.583 | 4 | Zinc finger-containing protein | |
| CL3587 | 78 | I | 86.583 | 4 | Uncharacterized protein | |
| rsa-miRn21 | Contig14638 | 137 | III | 42.358 | 3.5 | Unknown protein |
| CL6275.Contig2 | 94 | I | 42.358 | 3.5 | Calcium-dependent protein kinase |