Table 1.
Genomic and structural characteristics of CCD4-like gene family in Citrus
| Gene name | Genomic code, Citrus clementina a | Genomic code, Citrus sinensis (SOGPb/DHSOGc) | Predicted introns (C.ca/C.sbc) | Predicted protein length (amino acids) (C. clementina/C. sinensis) | Chloroplast transit peptided | EST Citrus librariese |
|---|---|---|---|---|---|---|
| CCD4a | Ciclev10031003m.g | orange1.1g044599m/ Cs7g14820.1 | 0 | 603/603 | Yes | Yes |
| CCD4b1 | Ciclev10028113m.g | orange1.1g040986m/ Cs8g14150 | 0 | 563/563 | Yes | Yes |
| CCD4b2 | Ciclev10030384m.g | orange1.1g046348/ Cs8g14180.1 | 0 | 557/358b or 418c | Yes | No |
| CCD4c | Ciclev1001335m.g | orange1.1044992m/ Cs6g19500.1 | 0 | 597/597 | Yes | Yes |
| CCD4d | Ciclev10013726m.g | orange1.1g0339955m/ Cs6g19550 | 2/4 | 412/420 | Yes | No |
a Haploid Clementine Genome International Citrus Genome Consortium (2011).
b Sweet Orange Genome Project (2010).
c Double haploid sweet orange genome (Xu et al., 2013).
d ChloroP 1.1. Prediction Server.
e HarvEST database 1.32, Assembly C52.