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. 2013 Oct 23;8(10):e78480. doi: 10.1371/journal.pone.0078480

Table 2. Top 10 up-regulated isoforms in GM and WM.

Up-regulated in GM
Gene Description
Chrom. FPKM GM FPKM WM Fold Change q-value Ensembl ID
KCNK12 potassium channel, subfamily K, member 12
chr2 2.81439 0 Unique to GM 0.0441582 ENSG00000184261
OLFM3 olfactomedin 3
chr1 2.6659 0.00538715 494.8627753 0.0477668 ENSG00000118733
KCNC1 potassium voltage-gated channel, Shaw-related subfamily, member 1
ch 11 12.8201 0.0341285 375.6420587 0.0473807 ENSG00000129159
RIMS3 regulating synaptic membrane exocytosis 3
chr1 28.2837 0.14296 197.8434527 0.0423304 ENSG00000117016
C1QL3 complement component 1, q subcomponent-like 3  chr10 6.69439 0.0433715 154.3499764 0.00357408 ENSG00000165985
GABRB2 gamma-aminobutyric acid (GABA) A receptor, beta 2  chr5 17.313 0.112452 153.9590225 8.69E-08 ENSG00000145864
RAB27B RAB27B, member RAS oncogene family chr18 3.83441 0.0286122 134.0131133 0.0100352 ENSG00000041353
GALNT9 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)  chr12 15.68 0.123142 127.3326728 0.0454933 ENSG00000182870
CAMK2A calcium/calmodulin-dependent protein kinase II alpha chr5 79.8284 0.664104 120.2046667 0.018091 ENSG00000070808
RGS4 regulator of G-protein signaling 4 chr1 56.2238 0.476735 117.9351212 2.53E-05 ENSG00000117152
Up-regulated in WM
Gene Description Chrom. FPKM GM FPKM WM Fold Change q-value Ensembl ID
EIF3F eukaryotic translation initiation factor 3, subunit F  chr11 0 16.3903 Unique to WM 0.00528201 ENSG00000175390
SUPT5H suppressor of Ty 5 homolog (S. cerevisiae) chr19 0 13.427 Unique to WM 0.0474906 ENSG00000196235
KIFAP3 kinesin-associated protein 3 chr1 0 8.74404 Unique to WM 0.000345075 ENSG00000075945
ATP6V1H ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H chr8 0 8.14233 Unique to WM 0.00382367 ENSG00000047249
FLNB filamin B, beta chr3 0 7.70063 Unique to WM 0.00648399 ENSG00000136068
PAK2 p21 protein (Cdc42/Rac)-activated kinase 2 chr3 0 6.18142 Unique to WM 0.00233423 ENSG00000180370
ZDHHC3 zinc finger, DHHC-type containing 3 chr3 0 6.10182 Unique to WM 0.0064209 ENSG00000163812
SEZ6L2 seizure related 6 homolog (mouse)-like 2 chr16 0 5.73869 Unique to WM 0.0315557 ENSG00000174938
DCAF7 DDB1 and CUL4 associated factor 7 chr17 0 4.83543 Unique to WM 0.0155276 ENSG00000136485
MECP2 methyl CpG binding protein 2 (Rett syndrome) chrX 0 4.18897 Unique to WM 0.00357408 ENSG00000169057