Table 3. Associations of Genomic Features with Genes Responding to the Treatment (E) at an FDR of 0.001 (Wilcoxon Ranked-Sum Tests).
Genomic Feature | N FDR < 0.001 | N FDR > 0.001 | Median FDR < 0.001 | Median FDR > 0.001 | W | P Value |
---|---|---|---|---|---|---|
Gene size (bp) | 5,580 | 20,060 | 2,405 | 2006 | 66,135,430 | 2.20E-16 |
Gene density (100 kb) | 5,561 | 18,071 | 29 | 28.75 | 51,819,028 | 0.0004071 |
Parental divergence (SNP/bp) | 5,564 | 18,081 | 0.003 | 0.004 | 48,204,299 | 2.23E-06 |
Segregating sites (θ) | 5,480 | 17,589 | 0.00742 | 0.00792 | 44,926,310 | 3.18E-14 |
Average pairwise (π) | 5,480 | 17,589 | 0.00381 | 0.00418 | 45,581,188 | 1.28E-09 |
Deletions (bp/kb) | 5,480 | 17,589 | 2.35 | 2.575 | 45,642,884 | 3.10E-09 |
Recombination rate (ρ/100kb) | 5,503 | 17,903 | 0.814 | 0.858 | 47,762,128 | 0.0006329 |
N, number of genes; W, Wilcoxon test statistic