Table 3. Associations of Genomic Features with Genes Responding to the Treatment (E) at an FDR of 0.001 (Wilcoxon Ranked-Sum Tests).

Genomic Feature	N FDR < 0.001	N FDR > 0.001	Median FDR < 0.001	Median FDR > 0.001	W	P Value
Gene size (bp)	5,580	20,060	2,405	2006	66,135,430	2.20E-16
Gene density (100 kb)	5,561	18,071	29	28.75	51,819,028	0.0004071
Parental divergence (SNP/bp)	5,564	18,081	0.003	0.004	48,204,299	2.23E-06
Segregating sites (θ)	5,480	17,589	0.00742	0.00792	44,926,310	3.18E-14
Average pairwise (π)	5,480	17,589	0.00381	0.00418	45,581,188	1.28E-09
Deletions (bp/kb)	5,480	17,589	2.35	2.575	45,642,884	3.10E-09
Recombination rate (ρ/100kb)	5,503	17,903	0.814	0.858	47,762,128	0.0006329

N, number of genes; W, Wilcoxon test statistic