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. 2013 Nov;5(11):a012963. doi: 10.1101/cshperspect.a012963

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Figure 2. — Phylogenetic analysis of the ORC family in archaea and eukaryotes. (Gray) Eukaryotes; (dark blue) Euryarchaeota, with the exception of (orange) Halobacteria; (light blue) Crenarchaeota; (purple) deeply branched archaeal lineages (Thaumarchaeota, Korarchaeota, Nanoarchaeota). The MUSCLE program (Edgar 2004) was used for construction of sequence alignments. The tree was reconstructed using the FastTree program (Price et al. 2010) (293 sequences and 186 aligned positions for the archaeal tree and 84 sequences and 380 aligned positions for the eukaryotic tree). For Halobacteria, the branches are collapsed. For characterized genes of Halobacteria, Sulfolobus, and yeast, the conventional gene name or protein identifies are indicated in red on the right of the corresponding sequence or the corresponding branch. For two archaeal sequences for which the structure is solved, its PDB code is indicated. (*) The corresponding genes are missing in some Halobacteria. (Red) Fast-evolving branches; (green) slow-evolving branches.

Figure 2. — Phylogenetic analysis of the ORC family in archaea and eukaryotes. (Gray) Eukaryotes; (dark blue) Euryarchaeota, with the exception of (orange) Halobacteria; (light blue) Crenarchaeota; (purple) deeply branched archaeal lineages (Thaumarchaeota, Korarchaeota, Nanoarchaeota). The MUSCLE program (Edgar 2004) was used for construction of sequence alignments. The tree was reconstructed using the FastTree program (Price et al. 2010) (293 sequences and 186 aligned positions for the archaeal tree and 84 sequences and 380 aligned positions for the eukaryotic tree). For Halobacteria, the branches are collapsed. For characterized genes of Halobacteria, Sulfolobus, and yeast, the conventional gene name or protein identifies are indicated in red on the right of the corresponding sequence or the corresponding branch. For two archaeal sequences for which the structure is solved, its PDB code is indicated. (*) The corresponding genes are missing in some Halobacteria. (Red) Fast-evolving branches; (green) slow-evolving branches.