Table 2.
Superpositions of p47 C with ubiquitin and ubiquitin-like domains
| Structure aligned with p47 C (PDB code) | No. of aligned residues at 3.5 Å distance cutoff (identical residues) | rmsd (Å) | p47 residue range aligned (identical residues) | Residue range of structure aligned |
|---|---|---|---|---|
| p47 (282–370) sol (1JRU) | 52 (39)a | 2.1 | 297–369 | 295–369 |
| (319–369)a | ||||
| FAF1 UBX (1H8C) | 68 (12) | 1.8 | 295–370 | 5–81 |
| UBI (1UBI) | 65 (12) | 1.5 | 296–370 | 1–72 |
| GATE-16 (1EO6) |
62 (4) |
1.8 |
294–369 |
27–111 |
| aDifferences in the N-terminal part due to a shorter loop between β-strands 1 and 2 in the crystal structure. Alignment of all residues gives rise to an rmsd of 2.7 Å. | ||||