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. 2004 Feb 26;23(5):1030–1039. doi: 10.1038/sj.emboj.7600139

Table 2.

Superpositions of p47 C with ubiquitin and ubiquitin-like domains

Structure aligned with p47 C (PDB code) No. of aligned residues at 3.5 Å distance cutoff (identical residues) rmsd (Å) p47 residue range aligned (identical residues) Residue range of structure aligned
p47 (282–370) sol (1JRU) 52 (39)a 2.1 297–369 295–369
      (319–369)a  
FAF1 UBX (1H8C) 68 (12) 1.8 295–370 5–81
UBI (1UBI) 65 (12) 1.5 296–370 1–72
GATE-16 (1EO6)
62 (4)
1.8
294–369
27–111
aDifferences in the N-terminal part due to a shorter loop between β-strands 1 and 2 in the crystal structure. Alignment of all residues gives rise to an rmsd of 2.7 Å.
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