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. 2004 Feb 5;23(4):701–711. doi: 10.1038/sj.emboj.7600100

Table 3.

Database searching with YadA β-roll -structure motif found 60 sequencesa

Swiss Prot ACb Protein Organism Size (a.a.) Motifsc Extended Motifsd Arrayse Necksf
Large domains (13–<30 motifs/array)
Q8RQ61 Putative surface protein Actinobacillus actinomycetemcomitans (Haemophilus actinomycetemcomitans) 1264 2 14 2 3
Q89IU6 Blr5538 protein Bradyrhizobium japonicum 762 7 17 2 3
Q8FCB2* Putative adhesin Escherichia coli 06 1778 4 31 4 13
Q8XDG4* Putative adhesin (Hypothetical 160.1 kDa protein) Escherichia coli Q157:H7 1588 3 26 4 11
Q9F3X5* MapB protein (Hsf) Pasteurella multocida 2712 9 23 2 9
Q9F3X6* MapA protein (Hsf) Pasteurella multocida 1299 7 23 2 4
Q92KQ7* Hypothetical protein R00458 Rhizobium loti (Sinorhizobium meliloti) 1291 5 19 1 7
Q98HJ2* Hypothetical protein mll0950 Rhizobium loti (Mesorhizobium loti) 1953 8 50 7 8
Q9FDA0* Putative outer membrane protein XadA Xanthomonas oryzae (pv. oryzae) 1265 1 34 4 4
Q8PCQ5* Outer membrane protein Xanthomonas campestris (pv. campestris) 2351 6 90 7 7
Q9LAX0* Hypothetical 127.4 kDa protein Xanthomonas campestris (pv. pelargonii) 1328 9 46 2 3
Q8PGS0* Outer membrane protein Xanthomonas axonopodis (pv. citri) 2190 5 80 7 7
Q8PGR8* Outer membrane protein Xanthomonas axonopodis (pv. citri) 1114 3 30 3 3
               
YadA-like domains (6–11 motifs/array)
Q89J37 Blr5449 protein Bradyrhizobium japonicum 372 2 3 1 1
Q9LA53* Immunoglobulin-binding protein EibE Escherichia coli 478 1 7 1 1
Q9LA56* Immunoglobulin-binding protein EibC Escherichia coli 504 1 6 1 1
Q9MCI8 Immunoglobulin-binding protein EibE Bacteriophage P-EibD 511 1 6 1 1
Q8KQM8* Haemagglutinin Moraxella catarrhalis 2314 2 10 2 4
Q8KQM9* Haemagglutinin Moraxella catarrhalis 1964 4 9 2 3
Q8ZL64* Putative inner membrane protein Salmonella typhimurium 1461 2 17 4 11
Q87DF4 Outer membrane protein XadA Xylella fastidiosa 997 1 19 4 4
Q9PC04* Surface protein Xylella fastidiosa 1190 2 21 3 8
Q9PD63* Surface exposed outer membrane protein Xylella fastidiosa 1004 1 22 4 4
Q87D62 Surface protein Xylella fastidiosa 1315 3 13 4 9
Q8CL86 Hypothetical Yersinia pestis 736 3 13 3 5
Q8ZHJ0* Putative surface protein Yersinia pestis 658 2 10 3 5
Q8CKM1* Hypothetical Yersinia pestis 641 2 10 3 4
               
Small arrays of 4–5 motifs
Q8G378 Outer membrane protein Brucella suis 740 2 6 2 5
Q8YEK6 Cell surface protein Brucella melitensis 365 1 3 1 2
Q8XPL8* Putative haemagglutinin-related protein Ralstonia solanacearum (Pseudomonas solanacearum) 1309 2 9 2 12
Q9F2D8* SapB protein (putative autotransporter) Salmonella typhi 1107 2 10 3 9
Q8DH28 Tlr2132 protein Synechococcus elongatus (Thermosynechcoccus elongatus) 276 4 5 2 2
Q9PD50* Surface protein Xylella fastidiosa 2059 4 12 3 14
Q87DE1 Surface protein Xylella fastidiosa 2052 1 6 8 16
               
No neck sequence
Q9X6K5 Hypothetical 13.0 kDa protein Klebsiella ocytoca 153 — 6 (1)g 0
Q9XUF9
 C49C3.4 protein
 Caenorhabditis elegans
 1566
 —
 5
 (1)g
 0
aThe five YadA entries and 19 completely repeating Gly-rich sequences (for example GTGTGTGTGTGTGT) are excluded. The remaining hits with at least two subsequent motifs are listed. The YadA protein family members are marked with *.
bSwiss-Prot/TrEMBL Accession code.
cNumber of YadA-like motifs.
dNumber of extended YadA-like motifs.
eNumber of arrays (at least three subsequent motifs followed by a neck region).
fNumber of neck regions.
gNo neck region following array of motifs.