Table 3.
Association results comparing SLE cases with LN versus SLE cases without LN in humans with particular polymorphisms in the TNIP1 gene
SNP | BP (hg19) | Allelesa | European Ancestry | African American | Asian | Hispanic | Gullah | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MAFb | OR (95% CI)c | P Value | MAFb | OR (95% CI)c | P Value | MAFb | OR (95% CI)c | P Value | MAFb | OR (95% CI)c | P Value | MAFb | OR (95% CI)c | P Value | |||
rs2233287 | 150440097 | G/A | 0.110 | 1.21 (1.03 to 1.4) | 0.02 | 0.204 | 1.1 (0.91 to 1.32) | 0.32 | NA | NA | NA | 0.094 | 0.95 (0.74 to 1.21) | 0.66 | 0.225 | 0.85 (0.48 to 1.51) | 0.59 |
rs4958881 | 150450236 | T/C | 0.140 | 1.16 (1.01 to 1.34) | 0.04 | 0.457 | 1.22 (1.05 to 1.42) | 8.47E-03 | 0.098 | 1.01 (0.77 to 1.31) | 0.139 | 0.95 (0.76 to 1.17) | 0.63 | 0.482 | 0.99 (0.62 to 1.57) | 0.95 | |
rs7708392 | 150457485 | G/C | 0.284 | 1.22 (1.1 to 1.37) | 3.66E-04 | 0.789 | 1.21 (1 to 1.47) | 0.06 | 0.204 | 1.03 (0.84 to 1.27) | 0.49 | 1.13 (0.97 to 1.32) | 0.12 | 0.138 | 1.24 (0.6 to 2.59) | 0.56 | |
rs999556 | 150473674 | A/G | 0.312 | 0.98 (0.88 to 1.1) | 0.74 | 0.47 | 1.07 (0.92 to 1.24) | 0.38 | 0.771 | 1.03 (0.85 to 1.25) | 0.488 | 1.07 (0.92 to 1.24) | 0.39 | 0.469 | 0.81 (0.51 to 1.3) | 0.39 | |
rs17728338 | 150478318 | G/A | 0.063 | 0.94 (0.77 to 1.16) | 0.56 | 0.093 | 1.02 (0.78 to 1.32) | 0.89 | 0.096 | 1.09 (0.83 to 1.44) | 0.042 | 1.07 (0.75 to 1.53) | 0.71 | 0.109 | 2.15 (0.93 to 4.93) | 0.07 |
MAF, minor allele frequency; OR, odds ratio; CI, confidence interval; NA, not applicable.
Major/minor.
Minor allele frequency
The odds ratio was calculated with respect to the minor allele.