Table 1.
Comparison of efficacy and reproducibility of influenza A and B extraction on three automated systems.
| TruTip/epMotiona | easyMAGa | QIAcubeb | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Input (gc) | Average Ct ± StDev |
% CV | Input (gc) | Average Ct ± StDev |
% CV | Input (gc) | Average Ct ± StDev |
% CV | |
| Influenza A | 7.45 × 106 | 24.77 ± 0.08 | 0.33 | 7.45 × 106 | 24.01 ± 0.08 | 0.33 | 3.73 × 106 | 24.09 ± 0.26 | 1.08 |
| 7.45 × 105 | 28.30 ± 0.49 | 0.49 | 7.45 × 105 | 27.22 ± 0.12 | 0.44 | 3.73 × 105 | 27.41 ± 0.30 | 1.09 | |
| 7.45 × 104 | 31.92 ± 0.38 | 0.38 | 7.45 × 104 | 30.72 ± 0.19 | 0.62 | 3.73 × 104 | 30.66 ± 0.22 | 0.72 | |
| 7.45 × 103 | 35.12 ± 0.34 | 0.97 | 7.45 × 103 | 34.74 ± 0.44 | 1.27 | 3.73 × 103 | 34.04 ± 0.23 | 0.68 | |
| 7.45 × 102 | 38.32 ± 1.15c | 3.00 | 7.45 × 102 | 36.58 ± 1.07 | 2.93 | 3.73 × 102 | 37.68 ± 0.35 | 0.93 | |
| 7.45 × 101 | 1/8 detected | NC | 7.45 × 101 | 0/8 detected | NC | 3.73 × 101 | 3/8 detected | NC | |
| Influenza B | 3.70 × 106 | 25.01 ± 0.16 | 0.64 | 3.70 × 106 | 23.44 ± 0.06 | 0.26 | 1.85 × 106 | 23.54 ± 0.39 | 1.66 |
| 3.70 × 105 | 27.82 ± 0.28 | 1.01 | 3.70 × 105 | 26.79 ± 0.08 | 0.30 | 1.85 × 105 | 26.98 ± 0.29 | 1.07 | |
| 3.70 × 104 | 31.21 ± 0.15 | 0.49 | 3.70 × 104 | 30.14 ± 0.17 | 0.17 | 1.85 × 104 | 30.04 ± 0.35 | 1.17 | |
| 3.70 × 103 | 34.68 ± 0.18 | 0.52 | 3.70 × 103 | 33.52 ± 0.10 | 0.30 | 1.85 × 103 | 33.25 ± 0.46 | 1.38 | |
| 3.70 × 102 | 38.54± 0.78d | 2.02 | 3.70 × 102 | 36.71 ± 0.59 | 1.61 | 1.85 × 102 | 36.31 ± 0.30 | 0.83 | |
| 3.70 × 101 | 1/8 detected | NC | 3.70 × 101 | 3/8 detected | NC | 1.85 × 101 | 4/8 detected | NC | |
Values are the average from 3 or 4 extractions for each dilution (input volume = 250 µL, elution volume = 100 µL) analyzed in duplicate by RT-PCR (n = 6 or 8).
Values are the average of 4 extractions per dilution (input volume = 125 µL, elution volume = 50 µL) analyzed in duplicate by RT-PCR (n = 8).Thus the calculated amounts used in equivalent PCR assays are equal in all three methods.
6 of 8 RT-PCR replicates detected
7 of 8 RT-PCR replicates detected
NC=Not calculated