Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2013 Aug 29;29(22):2869–2876. doi: 10.1093/bioinformatics/btt499

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author 2013. Published by Oxford University Press. All rights reserved.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

PMC Copyright notice

Fig. 1. — Illustration of the PTP. The example tree contains 6 speciation events: R, A, B, D, E, F, and 4 species: C, D, E, F. Species C consists of one individual; species D, E, F have two individuals each. The thick lines represent among-species PTP, and the thin lines represent within-species PTPs. The Newick representation of this tree is ((C:0.14, (d1:0.01, d2:0.02)D:0.1)A:0.15, ((e1:0.015, e2:0.014)E:0.1, (f1:0.03, f2:0.02)F:0.12)B:0.11)R. The tree has a total of 16 different possible species delimitations. The maximum likelihood search returned the depicted species delimitation with a log-likelihood score of 24.77, and = 8.33 and = 55.05

Inline graphic — Illustration of the PTP. The example tree contains 6 speciation events: R, A, B, D, E, F, and 4 species: C, D, E, F. Species C consists of one individual; species D, E, F have two individuals each. The thick lines represent among-species PTP, and the thin lines represent within-species PTPs. The Newick representation of this tree is ((C:0.14, (d1:0.01, d2:0.02)D:0.1)A:0.15, ((e1:0.015, e2:0.014)E:0.1, (f1:0.03, f2:0.02)F:0.12)B:0.11)R. The tree has a total of 16 different possible species delimitations. The maximum likelihood search returned the depicted species delimitation with a log-likelihood score of 24.77, and = 8.33 and = 55.05