Table 1.
General features of Alishewanella species genomes
| Parameter | Value for Alishewanella species |
||
|---|---|---|---|
| A. jeotgali | A. aestuarii | A. agri | |
| Isolation source | Fermented food | Tidal flat sediment | Landfill soil |
| Genome size (bp) | 3,844,563 | 3,588,054 | 3,491,709 |
| GC content (%) | 50.66 | 50.98 | 50.60 |
| Plasmid detected | None | None | None |
| No. of tRNA genes | 64 | 70 | 68 |
| No. of rRNA genes | 6 | 4 | 3 |
| 5S | 1 | 0b | 0b |
| 16S | 1 | 2 | 1 |
| 23S | 4 | 2 | 2 |
| No. of protein-coding sequences | 3,669 | 3,380 | 3223 |
| No. (%) of protein-coding sequences with predicted function | 1,728 (47.1) | 2,305 (68.2) | 1,625 (50.4) |
| No. (%) of protein-coding sequences with assigned COGa | 2,227 (60.7) | 2,370 (70.1) | 2,349 (72.9) |
| DNA coding density (%) | 88.9 | 90.6 | 91.6 |
| Average gene length (bp) | 931.6 | 957.4 | 1,008.3 |
a
The COG category “function unknown (S)” was not included.
b
The number of rRNA genes was counted from different contigs. Additional rRNA genes can be present in gapped sequences.