Table 1.
Gene | Primer/probe | Sequence (5′→3′)a | Reference | Nucleotide positions | Size (bp) |
---|---|---|---|---|---|
blaGIM-1 | GIM1-F | CGACACACCTTGGTCTGAAGAA | AJ620678 | 1232–1253 | 81 |
GIM1-R | GATGCTAGCCATAACCTGGTATCC | 1313–1290 | |||
GIM1-P | HEX-ACACGAAGTTGTTATTATCCTGGGCGACTGAC-BHQ-1 | 1255–1286 | |||
blaVIM-1 | VIM1-F | TGCGCTTCGGTCCAGTAGA | FJ172675 | 698–716 | 76 |
VIM1-R | TGACGGGACGTATACAACCAGAT | 774–752 | |||
VIM-P | FAM-CTTCTATCCTGGTGCTGCGCATTCG-BHQ-1 | 720–744 | |||
blaVIM-2 | VIM2-F | GCGCTTCGGTCCAGTAGAAC | AF191564 | 1810–1829 | 80 |
VIM2-R | CTCGCAGACGGGACGTACA | 1890–1872 | |||
VIM-P | Same probe as for blaVIM-1 | 1831–1855 | |||
blaIMP-1 | IMP1-F | GGGCGGAATAGAGTGGCTTA | AY168635 | 303–322 | 93 |
IMP1-R | GGCTTGAACCTTACCGTCTTTTT | 396–374 | |||
IMP1-P | HEX-CGATCTATCCCCACGTATGCATCTGAATTAACA-BHQ-1 | 328–360 | |||
blaNDM-1 | NDM1-F | CGGCATCACCGAGATTGC | FN396876 | 2547–2564 | 73 |
NDM1-R | CACCGACATCGCTTTTGGT | 2620–2602 | |||
NDM1-P | FAM-GCGACTTGGCCTTGCTGTCCTTG-BHQ-1 | 2568–2590 |
HEX, hexachlorofluorescein; BHQ-1, black hole quencher 1; FAM, 6-carboxyfluorescein.