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. 2013 Oct;57(10):5162–5165. doi: 10.1128/AAC.00118-13

Table 1.

Carbapenemase multiplex primers and probes

Gene Primer/probe Sequence (5′→3′)a Reference Nucleotide positions Size (bp)
blaGIM-1 GIM1-F CGACACACCTTGGTCTGAAGAA AJ620678 1232–1253 81
GIM1-R GATGCTAGCCATAACCTGGTATCC 1313–1290
GIM1-P HEX-ACACGAAGTTGTTATTATCCTGGGCGACTGAC-BHQ-1 1255–1286
blaVIM-1 VIM1-F TGCGCTTCGGTCCAGTAGA FJ172675 698–716 76
VIM1-R TGACGGGACGTATACAACCAGAT 774–752
VIM-P FAM-CTTCTATCCTGGTGCTGCGCATTCG-BHQ-1 720–744
blaVIM-2 VIM2-F GCGCTTCGGTCCAGTAGAAC AF191564 1810–1829 80
VIM2-R CTCGCAGACGGGACGTACA 1890–1872
VIM-P Same probe as for blaVIM-1 1831–1855
blaIMP-1 IMP1-F GGGCGGAATAGAGTGGCTTA AY168635 303–322 93
IMP1-R GGCTTGAACCTTACCGTCTTTTT 396–374
IMP1-P HEX-CGATCTATCCCCACGTATGCATCTGAATTAACA-BHQ-1 328–360
blaNDM-1 NDM1-F CGGCATCACCGAGATTGC FN396876 2547–2564 73
NDM1-R CACCGACATCGCTTTTGGT 2620–2602
NDM1-P FAM-GCGACTTGGCCTTGCTGTCCTTG-BHQ-1 2568–2590
a

HEX, hexachlorofluorescein; BHQ-1, black hole quencher 1; FAM, 6-carboxyfluorescein.