Table 7. SNPs selected1 for the multi-SNP models, corresponding gene, and model adequacy indicator.
RMSE2 | ||||||||||
Phenotype | SNP | BTA | Gene Symbol | T | V | MA4 | ||||
ADG | rs108939474 | 2 | - | 0.1049 | 0.1187 | 11.68% | ||||
rs109934193 | 2 | NCKAP5 | ||||||||
rs110787048 | 4 | DPP6 | ||||||||
rs42433916 | 7 | - | ||||||||
rs109945988 | 11 | - | ||||||||
rs109957444 | 14 | FAM135B | ||||||||
rs42230512 | 14 | TATDN1 | ||||||||
rs108964818 | 15 | KDELC2 | ||||||||
rs41768978 | 15 | PHOX2A | ||||||||
DMI | rs41588990 | 6 | CNOT6L | 0.5242 | 0.5650 | 7.21% | ||||
rs41577108 | 13 | - | ||||||||
rs41629972 | 13 | - | ||||||||
rs41632270 | 13 | - | ||||||||
rs41577655 | 15 | - | ||||||||
rs43291568 | 15 | CLMP | ||||||||
rs110911295 | 20 | - | ||||||||
rs41624569 | 26 | - | ||||||||
RMSE 2 | ||||||||||
ADG | DMI | RMSC 3 | ||||||||
T | V | T | V | T | V | MA 4 | ||||
Bivariate | rs108964818 | 15 | KDELC2 | 0.0802 | 0.0985 | 0.3700 | 0.4672 | 0.0949 | 0.1166 | 19.40% |
rs110522962 | 17 | - | ||||||||
rs41624569 | 26 | - | ||||||||
rs41600811 | 22 | - | ||||||||
rs109709275 | 15 | GRAMD1B | ||||||||
rs42459305 | 29 | - | ||||||||
rs109945988 | 11 | - |
P-value <0.0001;
Root mean square errors (RMSE) for the models using the training (T) and validation (V) data sets;
Root means square covariance (RMSC) for the bivariate model using the training (T) and validation (V) data sets;
MA, Model adequacy as defined in Eqs. 3 and 4, for the univariate and bivariate analyses, respectively.