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. 2013 Oct 29;8(10):e78530. doi: 10.1371/journal.pone.0078530

Table 7. SNPs selected1 for the multi-SNP models, corresponding gene, and model adequacy indicator.

RMSE2
Phenotype SNP BTA Gene Symbol T V MA4
ADG rs108939474 2 - 0.1049 0.1187 11.68%
rs109934193 2 NCKAP5
rs110787048 4 DPP6
rs42433916 7 -
rs109945988 11 -
rs109957444 14 FAM135B
rs42230512 14 TATDN1
rs108964818 15 KDELC2
rs41768978 15 PHOX2A
DMI rs41588990 6 CNOT6L 0.5242 0.5650 7.21%
rs41577108 13 -
rs41629972 13 -
rs41632270 13 -
rs41577655 15 -
rs43291568 15 CLMP
rs110911295 20 -
rs41624569 26 -
RMSE 2
ADG DMI RMSC 3
T V T V T V MA 4
Bivariate rs108964818 15 KDELC2 0.0802 0.0985 0.3700 0.4672 0.0949 0.1166 19.40%
rs110522962 17 -
rs41624569 26 -
rs41600811 22 -
rs109709275 15 GRAMD1B
rs42459305 29 -
rs109945988 11 -
1

P-value <0.0001;

2

Root mean square errors (RMSE) for the models using the training (T) and validation (V) data sets;

3

Root means square covariance (RMSC) for the bivariate model using the training (T) and validation (V) data sets;

4

MA, Model adequacy as defined in Eqs. 3 and 4, for the univariate and bivariate analyses, respectively.