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. 2013 Oct 16;52(43):7659–7668. doi: 10.1021/bi400695r

Table 1. NMR Restraints and Statistical Analysis of the Refined Structure of the OL-1b Duplex.

NMR restraints (no.)  
total restraints for rMD calculations 772
experimental NOE distance restraints 211
intranucleotide NOE restraints 114
internucleotide NOE restraints 97
restraints of 7amG base 31
empirical base pair restraints 52
empirical torsion angle restraints 200
backbone torsion angle restraints 100
deoxyribose torsion angle restraints 100
structure refinement statisticsa  
no. of distance restraint violations 54
no. of torsion restraint violations 11
total distance penalty/maximal penalty (kcal/mol) 2.84/0.01
total torsion penalty/maximal penalty (kcal/mol) 1.13/0.30
distant restraint force field (kcal mol–1 Å–2) 32
torsion restraint force field (kcal mol–1 deg–2) 32
NMR R factor (Rx) (×10–2)b 8.89
intranucleotide NOEs 6.13
internucleotide NOEs 12.6
root-mean-square deviation of refined structures (on all atoms) 0.45
a

The mixing time used to calculate Rx was 250 ms.

b

Rx = ∑|(a0)i1/6 – (ac)i1/6|/|(a0)i1/6|, where a0 and ac are the intensities of observed (non-zero) and calculated NOE cross-peaks, respectively.