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. 2013 Oct 30;8(10):e77292. doi: 10.1371/journal.pone.0077292

Table 3. Significantly regulated pathways in zebrafish after TCDD treatment, by GSEA analysis with cutoff FDR<0.25.

Pathways NES NOM p-value FDR q-value
G1 to S cell cycle reactome 1.94 <0.001 0.024
HSA04110 cell cycle 1.9 <0.001 0.025
Cell cycle KEGG 1.86 0.003 0.031
Proteasome pathway 1.81 0.007 0.053
HSA03050 Proteasome 1.74 0.007 0.115
HSA03010 Ribosome −2.31 <0.001 <0.001
Ribosomal proteins −2.21 <0.001 0.001
HSA04020 Calcium signaling pathway −1.85 0.005 0.126
Prostaglandin synthesis regulation −1.81 0.005 0.167
ST FAS signaling pathway −1.81 0.007 0.139
ST T cell signal transduction −1.79 <0.001 0.135
HSA04650 Natural killer cell mediated cytotoxicity −1.76 0.007 0.160
HSA04660 T cell receptor signaling pathway −1.75 0.008 0.152

Note: NES, normalized enrichment scores; NOM p-value, nominal p-value for enrichment; FDR, false discovery rate.