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. 2013 Oct 2;163(3):1306–1322. doi: 10.1104/pp.113.227314

Table III. Examples of the DEGs in la1-ref mutant nodes that are predicted to be involved in auxin transport or auxin response.

Gene Identifier in Maize Putative Ortholog in Arabidopsis Description Change (log2-fold), la1-ref/Wild Type
Auxin transport-related genes
 GRMZM2G109527 AT1G71960.1 (ABCG25) ATP-binding cassette family G25 5.15
 GRMZM2G479906 AT1G15520.1 (PDR12) ATPase, coupled to transmembrane movement of substances −2.82
 GRMZM5G874955 AT1G15520.1 (ABCG40, PDR12) Pleiotropic drug resistance12 −3.77
 GRMZM2G315375 AT2G36910.1 (ABCB1) ATP-binding cassette subfamily B1 5.91
 GRMZM2G004161 AT3G48360.1 (BT2) BTB and TAZ domain protein2 5.78
 GRMZM2G051005 AT5G48930.1 (HCT) Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 4.00
 GRMZM2G097900 AT5G37770.1 (CML24, TCH2) EF hand calcium-binding protein family 6.38
 GRMZM2G138248 AT4G39950.1 (CYP79B2) Cytochrome P450/family 79/subfamily B/polypeptide 2 −3.78
 GRMZM2G156296 AT5G48930.1 (HCT) Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 4.06
 GRMZM2G148200 AT1G15690.1 (AVP-3, AVP1) Inorganic H pyrophosphatase family protein −3.11
 GRMZM2G149184 AT1G73590.1 (PIN1) Auxin efflux carrier family protein −3.71
 GRMZM2G429940 AT4G30960.1 (CIPK6, SIP3, SNRK3.14) SOS3-interacting protein3 4.93
 GRMZM5G813363 AT5G56750.1 Ndr family protein −2.91
 GRMZM2G465595 AT2G01940.1 (SGR5, ATIDD15) Nucleic acid binding/transcription factor/zinc ion binding 4.17
Auxin response genes
 GRMZM2G037368 AT4G29080.1 (IAA27, PAP2) Phytochrome-associated protein2 3.68
 GRMZM2G163848 AT2G22670.4 (IAA8) IAA-induced protein8 5.89
 GRMZM2G301642 AT1G49010.1 Duplicated homeodomain-like superfamily protein 4.47
 GRMZM2G405094 AT4G09460.1 (MYB6) Myb domain protein6 5.55
 GRMZM5G803308 AT4G37260.1 (MYB73) Myb domain protein73 7.14
 GRMZM2G414727 AT2G46690.1 SAUR-like auxin-responsive protein family 6.08
 GRMZM2G009103 AT5G64700.1 Nodulin MtN21/EamA-like transporter family protein −5.62
 GRMZM2G136567 AT5G07050.1 Nodulin MtN21/EamA-like transporter family protein −7.23
 GRMZM2G066219 AT5G47530.1 Auxin-responsive protein 3.13
 GRMZM2G097989 AT2G29480.1 (ATGSTU2, GST20) Auxin-responsive GST 5.36
 GRMZM2G331638 AT2G04850.1 Auxin-responsive protein related 3.67
 GRMZM5G804575 AT1G75500.1 (WAT1) Auxin-responsive nodulin MtN21-like transporter family 3.08
 GRMZM2G007953 AT1G75500.1 (WAT1) Auxin-responsive nodulin MtN21-like transporter family 2.74