Table 1. Genetic diversity of X chromosomal and autosomal loci.

Locus ID: Gene symbol	Rhesus macaque genomea	NIMb	NPb	Length	πSAc	πSIMc	πSPc
CDS28: AMELX	Chr X: 8,970,276–8,970,952	29	18	677	0.00059	0.00101	0.00000
CDS29: UTX	Chr X: 42,828,710–42,829,485	29	18	746	0.00122	0.00181	0.00000
CDS30: UBE1X	Chr X: 45,033,665–45,034,444	29	18	780	0.00113	0.00123	0.00036
CDS31: RPS4X	Chr X: 71,201,776–71,202,514	29	18	740	0.00026	0.00026	0.00043
CDS32: ACSL4	Chr X: 108,393,547–108,394,254	29	18	708	0.00128	0.00104	0.00120
CDS33: RBMX	Chr X: 134,951,606–134,952,319	29	18	714	0.00018	0.00000	0.00000
X chr. CDS average				727.5	0.00078	0.00089	0.00033
IGS28	Chr X: 2,035,502–2,036,174	27	18	681	0.00193	0.00223	0.00031
IGS29	Chr X: 34,279,437–34,280,302	29	18	866	0.00183	0.00203	0.00066
IGS30	Chr X: 40,194,693–40,195,387	29	18	695	0.00194	0.00221	0.00151
IGS31	Chr X: 74,880,899–74,881,659	29	18	749	0.00061	0.00072	0.00039
X chr. IGS average				747.8	0.00158	0.00180	0.00072
Autosomal CDS averaged	0.00388			760.9	0.00388	0.00414	0.00231
Autosomal IGS averaged	0.00352			735.4	0.00352	0.00359	0.00244

^aCoordinates of the rhesus macaque draft genome sequence (rheMac2).

^bNumber of sampled chromosomes; subscripts represent Indonesian–Malaysian (IM), and Philippine (P) origins.

^cNucleotide diversity at silent sites (πS); subscripts represent all samples (A), Indonesian–Malaysian (IM), and Philippine (P) origins.

^dAutosomal data from Osada et al. (2010): average of 54 autosomal loci.