TABLE 1.
Genomic location of viral insertions in F1 families maintained with a selected insertion. The genomic location of the viral insertion in these fish, strand impacted by the insertion and putative gene targeted for overexpression in the presence of Gal4-VP16 are indicated.
| Family | Insertion(Chr;bp) | Strand | Target gene | Distance | Accession # |
|---|---|---|---|---|---|
| pa001 | 16; 25040525 | minus | ENSDARESTG00000016651 | 1st exon | BC134041 |
| pa002 | 13; 547721 | plus | ENSDART00000029051 (AS) | downstream | NM_001109731 |
| pa003 | 8; 3258272 | plus | cxxc1l (zgc:63512) | 765 bp upstream | NM_200599.1 |
| 4; 4157290 | plus | si:dkey14d8.5 | 1st intron | NM_001044841 | |
| 25; 24786581 | plus | zgc:162316 | 627 bp upstream | NM_001089524 | |
| 9; 35404108 | plus | LOC564612 | 12kb upstream | XM_687945 | |
| 21; 20464166 | plus | zgc:63532 | 13 kb upstream | NM_200451 | |
| 1; 14743223 | minus | ENSDARESTG00000017576 | 15 kb upstream | BC163858 | |
| 19; 37538331 | plus | gngt1 | 10kb upstream | NM_199967 | |
| pa004 | 23; 5325388 | plus | gata5 | 34 kb upstream | NM_131235 |
| 9; 6372551 | plus | Q0V969_DANRE | 1st intron | XM_686856 | |
| 10; 1548701 | plus | ENSDARESTG00000013253 | 1st intron | XR_045177 | |
| pa005 | 17; 8060679 | plus | sec23a | 68 bp upstream | NM_213465 |
| pa007 | 21; 330010041 | plus | zgc:92775 | 100 bp upstream | NM_001003424 |
| 19; 28445980 | plus | zgc:153389 | 100 bp upstream | NM_001045380 | |
| 25; 24786583 | minus | Serdin1 | 4.5 kb upstream | NM_001009559 | |
| pa008 | 3; 30287910 | plus | LOC557147 | 12.3 kb upstream | XM_680152 |
| 22; 1567618 | plus | ENSDARG00000071738 | 180bp upstream | XM_001922442 | |
| pa010 | 12; 17866096 | minus | zgc:64155 | 5 kb upstream | NM_200049 |
| 19; 12118629 | minus | no target within 100 kb | |||
| pa011 | 23; 19856166 | plus | ENSDART00000104210 | 2nd intron | BC075740 |
| 22; 3247549 | plus | LOC568321 | 4 kb upstream | XM_691644 | |
| pa013 | 20; 48008187 | minus | zgc:56518 | 600 bp upstream | NM_213427 |
| 17; 18866024 | plus | ENSDARESTG00000001086 | 3rd intron | XM_001341307 | |
| 21; 4743363 | minus | ENSDARESTG00000008827 | 2nd intron | BC134922 | |
| pa014 | 24; 12685262 | plus | no target within 100kb | ||
| 14; 4889047 | minus | ENSDARESTG00000016928 | 1st intron | XM_001922888 | |
| 15; 26281200 | plus | foxn1 | 16 kb upstream | NM_212573 | |
| 6; 21336874 | plus | ENSDARESTG00000003321 | 1st intron | NM_199526 | |
| 8; 54135254 | plus | FEM1 | 28 kb upstream | AY249190 | |
| pa015 | 5; 13747065 | minus | sox19a | 1.6 kb upstream | NM_130908 |
| pa016 | 5; 59290951 | plus | ENSDARESTG00000019052 | 29 kb upstream | XM_684978 |
| 23; 20977122 | plus | ENSDARESTG00000023027 | 1st intron | CR388207 | |
| pa019 | 9; 33247346 | minus | zgc:77231 | 50 bp upstream | NM_200000 |
| pa020 | 12; 23590340 | minus | ENSDARESTG00000009439 | 276 bp upstream | XM_683728 |
| pa025 | Zv7_scaffold2487 | plus | ENSDARESTG00000024884 | 7kb upstream | BX927103 |
| 6; 9608673 | minus | dnah9l | 4th intron | XM_001340261 | |
| 8; 19746052 | minus | ENSDARESTG00000017700 | 4.2 kb upstream | BC075974 | |
| pa026 | 15; 3362892 | minus | smc4 | 42kb upstream | NM_173253 |
| pa027 | 13; 34015197 | minus | txndc1 | 1st intron | XM_001336514 |
| pa028 | 22; 14723856 | minus | nfia | 66 kb upstream | NM_001079962 |
| 24; 22419219 | plus | pol1a | 1kb upstream | XP_001342845 | |
| 15; 30463249 | minus | gucy2f | 17 kb upstream | XM_684538 | |
| 17; 1838398 | plus | zgc:56248 | 2nd intron | NM_201215 | |
| pa030 | 19; 20906119 | minus | ENSDARESTG00000003278 | 6 kb upstream | BC152302 |
| pa031 | Zv7_NA2685 | minus | ENSDARESTG00000018886 | 1st intron | NM_131081 |