Table 1. Description of common core-region haplotypes defined using 16 SNPs.
| Haplotype | Polymorphism |
|||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP ID | rs1834640 | rs2675345 | rs2469592 | rs2470101 | rs938505 | rs2433354 | rs2459391 | rs2433356 | rs2675347 | rs2675348 | rs1426654 | rs2470102 | rs16960631 | rs2675349 | rs3817315 | rs7163587 |
| Nickname | c1 | c2 | c3 | c4 | c5 | c6 | c7 | c8 | c9 | c10 | c11 | c12 | c13 | c14 | c15 | c16 |
| Ancestral state | G | G | G | C | C | T | G | A | G | G | G | G | A | G | T | T |
| C1 | ||||||||||||||||
| C2 | T | |||||||||||||||
| C3 | A | T | ||||||||||||||
| C4 | T | |||||||||||||||
| C5 | A | T | A | C | ||||||||||||
| C6 | A | T | A | G | C | |||||||||||
| C7 | A | T | A | G | G | C | ||||||||||
| C8 | A | T | C | A | G | A | A | C | C | |||||||
| C9 | A | T | C | A | G | A | A | A | C | C | ||||||
| C10 | A | A | T | C | A | G | A | A | A | A | C | C | ||||
| C11 | A | A | A | T | C | A | G | A | A | A | A | A | C | C | ||
Only differences from ancestral allele are shown. Rare core-region haplotypes (omitted here) are tabulated in Table S3.