Table 2. Distribution of common core-region haplotypes in HapMap populations.
Haplotype | HapMap Population |
||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
CEU | TSI | GIH | CHB | CHD | JPT | MKK | LWK | YRI | ASW | MEX | |
C1 | 7 | 4 | 13 | 1 | |||||||
C2 | }1a | 1 | 1 | 38 | 26 | 38 | 21 | 1 | |||
C3 | 14 | 14 | 5 | 3 | 9 | ||||||
C4 | 6 | 14 | 7 | 3 | |||||||
C5 | 1 | 1 | 13 | 14 | 50 | 19 | |||||
C6 | 1 | 34 | 21 | 35 | 52 | 33 | 42 | 20 | }7b | ||
C7 | 2 | 40 | 39 | 36 | 1 | 2 | 3 | 1 | |||
C8 | 1 | 1 | 5 | 3 | |||||||
C9 | 3 | 36 | 44 | 51 | 65 | 63 | 61 | 27 | 15 | ||
C10 | 1 | 34 | 41 | 37 | 1 | 9 | |||||
C11 | 109 | 173 | 167 | 3 | 3 | 1 | 92 | 9 | 3 | 22 | 60 |
Other-d | 6 | 2 | 1 | 2 | 1 | 1 | 2 | 3 | 2 | ||
Other-a | 3 | 6 | 5 | 7 | 10 | 8 | 9 | 1 | |||
total | 115 | 176 | 176 | 168 | 170 | 172 | 286 | 180 | 230 | 126 | 104 |
Zeroes representing absent haplotypes are omitted. Other-d indicates minor haplotypes carrying derived allele of SNP c11 (rs1426654), whereas other-a indicates minor haplotypes carrying its ancestral allele. Populations are described in the Materials and Methods.
Haplotypes C2 and C3 are not distinguished in TSI.
C6 and C7 are not distinguished in MEX.