Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2013 Sep 13;14(Suppl 11):S8. doi: 10.1186/1471-2105-14-S11-S8

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

Copyright © 2013 Wu et al; licensee BioMed Central Ltd.

This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

PMC Copyright notice

The percentage of reads or read pairs that map to the annotated and un-annotated genomic sequences. Sub-figures (a)-(d) represent different combinations of samples (top: MAQC samples with SRA accession number SRP000727; bottom: thrombin study samples with SRA accession number SRP008482) and spliced mappers (left: OSA; right: TopHat). The UCSC annotation usually has the lowest percentage of reads that mapped to the annotated genomic sequences, while the AceView annotation usually has the highest percentage. The same observation is applicable to all four combinations of samples and spliced mappers.