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. 2013 Sep 27;(26):21–70. doi: 10.3897/phytokeys.26.5649

Table 2.

Summary of the four plastid and nrDNA ITS regions used in the maximum likelihood and Bayesian searches indicated by Akaike’s Information Criterion (AIC).

Characteristic rpL32-trnL ndhA intron rps16 intron rps16-trnK Combined plastid data ITS Overall combined dataset
Total aligned characters 1233 1323 1074 1040 4670 832 5502
Maximum likelihood scores (-lnL) 9567.4667 8778.3245 6732.027 8265.2405 20947.0843
Number of substitution types 6 6 6 6 6
Model for among−site rate variation gamma gamma gamma gamma gamma
Substitution rates 0.9361<br/> 1.8439<br/> 0.4825<br/> 1.4468<br/> 1.5696<br/> 1.0000 1.3591<br/> 2.8338<br/> 0.5457<br/> 2.2589<br/> 2.9694<br/> 1.0000 1.0865<br/> 1.4745<br/> 0.3367<br/> 1.3805<br/> 2.2541<br/> 1.0000 1.1338<br/> 2.6853<br/> 0.5231<br/> 1.7173<br/> 2.4576<br/> 1.0000 1.2977<br/> 2.6471<br/> 1.4264<br/> 0.9278<br/> 4.9114<br/> 1.0000
Character state frequencies 0.3836<br/> 0.1431<br/> 0.1295<br/> 0.3436 0.3767<br/> 0.1249<br/> 0.1430<br/> 0.3552 0.3925<br/> 0.1047<br/> 0.1636<br/> 0.3390 0.3066<br/> 0.1341<br/> 0.1407<br/> 0.4184 0.2495<br/> 0.1914<br/> 0.2496<br/> 0.3093
Proportion of invariable sites 0.0774 0.2175 0.1551 0.1303 0.2365
Substitution model GTR+I+G TVM+G TIM3+I+G TIM3+G GTR+I+G
Gamma shape parameter (α) 0.9636 1.2427 1.1594 1.6560 0.9959