Table 2.
Summary of the four plastid and nrDNA ITS regions used in the maximum likelihood and Bayesian searches indicated by Akaike’s Information Criterion (AIC).
| Characteristic | rpL32-trnL | ndhA intron | rps16 intron | rps16-trnK | Combined plastid data | ITS | Overall combined dataset |
|---|---|---|---|---|---|---|---|
| Total aligned characters | 1233 | 1323 | 1074 | 1040 | 4670 | 832 | 5502 |
| Maximum likelihood scores (-lnL) | 9567.4667 | 8778.3245 | 6732.027 | 8265.2405 | 20947.0843 | ||
| Number of substitution types | 6 | 6 | 6 | 6 | 6 | ||
| Model for among−site rate variation | gamma | gamma | gamma | gamma | gamma | ||
| Substitution rates | 0.9361<br/> 1.8439<br/> 0.4825<br/> 1.4468<br/> 1.5696<br/> 1.0000 | 1.3591<br/> 2.8338<br/> 0.5457<br/> 2.2589<br/> 2.9694<br/> 1.0000 | 1.0865<br/> 1.4745<br/> 0.3367<br/> 1.3805<br/> 2.2541<br/> 1.0000 | 1.1338<br/> 2.6853<br/> 0.5231<br/> 1.7173<br/> 2.4576<br/> 1.0000 | 1.2977<br/> 2.6471<br/> 1.4264<br/> 0.9278<br/> 4.9114<br/> 1.0000 | ||
| Character state frequencies | 0.3836<br/> 0.1431<br/> 0.1295<br/> 0.3436 | 0.3767<br/> 0.1249<br/> 0.1430<br/> 0.3552 | 0.3925<br/> 0.1047<br/> 0.1636<br/> 0.3390 | 0.3066<br/> 0.1341<br/> 0.1407<br/> 0.4184 | 0.2495<br/> 0.1914<br/> 0.2496<br/> 0.3093 | ||
| Proportion of invariable sites | 0.0774 | 0.2175 | 0.1551 | 0.1303 | 0.2365 | ||
| Substitution model | GTR+I+G | TVM+G | TIM3+I+G | TIM3+G | GTR+I+G | ||
| Gamma shape parameter (α) | 0.9636 | 1.2427 | 1.1594 | 1.6560 | 0.9959 |