Table 3. Experiments on very complex datasets.
Metagenome datasets | Xgenovo | MAP |
---|---|---|
50 Viruses log-normal | β = 0.5 α | |
N50 (bp) | 28903 | 278 |
Total length (bp) | 1761195 | 5396779 |
Max length (bp)/# Contig | 110113/502 | 1479/17966 |
Cover rate (%)/Chimera rate (%) | 94.84/0.93 | 92.75/0 |
CPU time (s)/Memory (GB) | 39738/2.566 | 52449/7.906 |
50 Viruses uniform | β = 0.5 α | |
N50 (bp) | 97184 | 288 |
Total length (bp) | 1794418 | 5293906 |
Max length (bp)/# Contig | 194028/123 | 1123/17519 |
Cover rate (%)/Chimera rate (%) | 96.99/6.07 | 97.1/0 |
CPU time (s)/Memory (GB) | 41324/2.761 | 25193/4.147 |
60 Viruses log-normal | β = 0.1 α | |
N50 (bp) | 10636 | 293 |
Total length (bp) | 2362232 | 5478753 |
Max length (bp)/# Contig | 108811/1120 | 1633/17258 |
Cover rate (%)/Chimera rate (%) | 92.38/1.19 | 87.59/0 |
CPU time (s)/Memory (GB) | 43206/3.228 | 16502/3.625 |
60 Viruses uniform | β = 0.3 α | |
N50 (bp) | 25099 | 301 |
Total length (bp) | 2840986 | 5283695 |
Max length (bp)/# Contig | 106273/346 | 1476/16628 |
Cover rate (%)/Chimera rate (%) | 96.77/1.06 | 24.44/0.09 |
CPU time (s)/Memory (GB) | 43786/3.618 | 14478/3.232 |
90 Viruses log-normal | β = 0.3 α | |
N50 (bp) | 2916 | 303 |
Total length (bp) | 3003232 | 5622001 |
Max length (bp)/# Contig | 126010/2640 | 1864/16890 |
Cover rate (%)/Chimera rate (%) | 85.14/0.63 | 77.52/0.02 |
CPU time (s)/Memory (GB) | 60162/ 4.27 | 21104/3.75 |
90 Viruses uniform | β = 0.5 α | |
N50 (bp) | 6480 | 362 |
Total length (bp) | 3631520 | 5728435 |
Max length (bp)/# Contig | 25751/1507 | 1785/15562 |
Cover rate (%)/Chimera rate (%) | 96.03/1.39 | 90.85/0.01 |
CPU time (s)/Memory (GB) | 56635/4.27 | 11656/2.76 |
115 Viruses log-normal | β = 0.5 α | |
N50 (bp) | 2457 | 318 |
Total length (bp) | 3437804 | 5689659 |
Max length (bp)/# Contig | 128459/3410 | 1806/16620 |
Cover rate (%)/Chimera rate (%) | 81.33/0.84 | 73.93/0.01 |
CPU time (s)/Memory (GB) | 68789/4.96 | 10480/ 3.42 |
115 Viruses uniform | β = 0.1 α | |
N50 (bp) | 4264 | 392 |
Total length (bp) | 4518801 | 6269732 |
Max length (bp)/# Contig | 27417/2720 | 1956/16104 |
Cover rate (%)/Chimera rate (%) | 96.07/0.59 | 88.07/0.02 |
CPU time (s)/Memory (GB) | 72487/5.29 | 8137/2.23 |