Skip to main content
. 2013 Oct 31;1:e196. doi: 10.7717/peerj.196

Table 3. Experiments on very complex datasets.

Metagenome datasets Xgenovo MAP
50 Viruses log-normal β = 0.5 α
N50 (bp) 28903 278
Total length (bp) 1761195 5396779
Max length (bp)/# Contig 110113/502 1479/17966
Cover rate (%)/Chimera rate (%) 94.84/0.93 92.75/0
CPU time (s)/Memory (GB) 39738/2.566 52449/7.906
50 Viruses uniform β = 0.5 α
N50 (bp) 97184 288
Total length (bp) 1794418 5293906
Max length (bp)/# Contig 194028/123 1123/17519
Cover rate (%)/Chimera rate (%) 96.99/6.07 97.1/0
CPU time (s)/Memory (GB) 41324/2.761 25193/4.147
60 Viruses log-normal β = 0.1 α
N50 (bp) 10636 293
Total length (bp) 2362232 5478753
Max length (bp)/# Contig 108811/1120 1633/17258
Cover rate (%)/Chimera rate (%) 92.38/1.19 87.59/0
CPU time (s)/Memory (GB) 43206/3.228 16502/3.625
60 Viruses uniform β = 0.3 α
N50 (bp) 25099 301
Total length (bp) 2840986 5283695
Max length (bp)/# Contig 106273/346 1476/16628
Cover rate (%)/Chimera rate (%) 96.77/1.06 24.44/0.09
CPU time (s)/Memory (GB) 43786/3.618 14478/3.232
90 Viruses log-normal β = 0.3 α
N50 (bp) 2916 303
Total length (bp) 3003232 5622001
Max length (bp)/# Contig 126010/2640 1864/16890
Cover rate (%)/Chimera rate (%) 85.14/0.63 77.52/0.02
CPU time (s)/Memory (GB) 60162/ 4.27 21104/3.75
90 Viruses uniform β = 0.5 α
N50 (bp) 6480 362
Total length (bp) 3631520 5728435
Max length (bp)/# Contig 25751/1507 1785/15562
Cover rate (%)/Chimera rate (%) 96.03/1.39 90.85/0.01
CPU time (s)/Memory (GB) 56635/4.27 11656/2.76
115 Viruses log-normal β = 0.5 α
N50 (bp) 2457 318
Total length (bp) 3437804 5689659
Max length (bp)/# Contig 128459/3410 1806/16620
Cover rate (%)/Chimera rate (%) 81.33/0.84 73.93/0.01
CPU time (s)/Memory (GB) 68789/4.96 10480/ 3.42
115 Viruses uniform β = 0.1 α
N50 (bp) 4264 392
Total length (bp) 4518801 6269732
Max length (bp)/# Contig 27417/2720 1956/16104
Cover rate (%)/Chimera rate (%) 96.07/0.59 88.07/0.02
CPU time (s)/Memory (GB) 72487/5.29 8137/2.23