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. 2013 Nov 5;8(11):e79520. doi: 10.1371/journal.pone.0079520

Table 1. Strains.

Strains Description Source/Reference
E. coli
S17-1 recA pro; hsdR; RP4- 2- Tc::Mu-Km::tn7; tra +; Kmr; Spr [37]
JM109 recA1 supE44 endA1 hsdR17 gyrA96 relA1 thi (lac–proAB) New England Biolabs
M15(pREP4) E. coli strain M15 containing pREP4 plasmid encoding lac repressor in trans, Kmr Qiagen
M15(pREP4)pQE30_2.4.1rpoE E. coli M15 harboring pQE30_2.4.1rpoE, Kmr, Apr This study
M15(pREP4)pQE30_2.4.1chrR E. coli M15 harboring pQE30_2.4.1chrR, Kmr, Apr This study
R. sphaeroides
2.4.1 Wild type [40]
2.4.1pPHUphrAlacZ 2.4.1 harboring pPHUphrAlacZ, Tcr [15]
2.4.1pRK415 Wild type harboring pRK415, Tcr This study
2.4.1ΔRSP_1090 2.4.1RSP_1090::Kmr cassette, Kmr This study
2.4.1ΔRSP_1090pRK415 2.4.1ΔRSP_1090 harboring pRK415, Kmr, Tcr This study
2.4.1ΔRSP_1091-1087 2.4.1RSP_1091-1087::Kmr cassette, Kmr This study
2.4.1ΔRSP_1096-1097 2.4.1RSP_1096-1097::Kmr cassette, Kmr This study
2.4.1ΔRSP_2710 2.4.1RSP_2710::Kmr cassette, Kmr This study
2.4.1ΔRSP_3242 2.4.1RSP_3242::Kmr cassette, Kmr This study
2.4.1ΔRSP_1090pRKRSP_1090 2.4.1ΔRSP_1090 harboring pRKRSP_1090, Kmr, Tcr This study
2.4.1ΔRSP1090pPHUphrAlacZ 2.4.1ΔRSP_1090 harboring pPHUphrAlacZ, Kmr,Tcr This study
2.4.1ΔRSP1090pPHUphrAlacZpBBR_RSP_1090 2.4.1ΔRSP_1090 pPHUphrAlacZ harboring pBBR_RSP_1090, Kmr,Tcr, Gmr This study
2.4.1ΔRSP_1091-1087pRKRSP_1090 2.4.1ΔRSP_1091-1087 harboring pRKRSP_1090, Kmr, Tcr This study
2.4.1ΔRSP_1091-1087pRKRSP_1091 2.4.1ΔRSP_1091-1087 harboring pRKRSP_1091, Kmr, Tcr This study
2.4.1ΔRSP_1091-1087pRKRSP_1091-1090 2.4.1ΔRSP_1091-1087 harboring pRKRSP_1091-1090, Kmr, Tcr This study
2.4.1ΔRSP_1091-1087pRKRSP_1091-1087 2.4.1ΔRSP_1091-1087 harboring pRKRSP_1091-1087, Kmr, Tcr This study
TF18 rpoEchrR mutation in 2.4.1, Tpr [41]
TF18pRK415 TF18 harboring pRK415, Tpr, Tcr This study
TF18pPHUphrAlacZ TF18 harboring pPHUphrAlacZ, Tpr, Tcr [15]
TF18pPHUphrAlacZ pBBR_2.4.1rpoEchrR TF18 pPHUphrAlacZ harboring pBBR_2.4.1rpoEchrR Tpr, Tcr, Gmr This study
2.4.1ΔRSP_1096-1097pPHUphrAlacZ 2.4.1ΔRSP_1096-1097 harboring pPHUphrAlacZ, Tpr, Tcr This study
2.4.1ΔRSP_2710pPHUphrAlacZ 2.4.1ΔRSP_2710harboring pPHUphrAlacZ, Tpr, Tcr This study
2.4.1ΔRSP_3242pPHUphrAlacZ 2.4.1ΔRSP_3242 harboring pPHUphrAlacZ, Tpr, Tcr This study
TF18pRK2.4.1rpoEchrR TF18 harboring pRK2.4.1rpoEchrR, Tpr, Tcr [42]