Table 5. BIC-based comparison of the three false positive rate control models.
| Trait | GLM |
MLM1 |
MLM2 |
|||
|---|---|---|---|---|---|---|
| -2 ln(L) | BIC | -2 ln(L) | BIC | -2 ln(L) | BIC | |
| LLGTH | 1069.0 | 1104.8 | 1065.0 | 1080.4 | 1026.1 | 1067.1 |
| NBT | 404.6 | 440.5 | 402.0 | 417.4 | 378.6 | 419.5 |
| SB | 3.3 | 39.1 | -1.6 | 13.8 | -12.2 | 28.8 |
| LENGTH | 1018.6 | 1054.4 | 1004.5 | 1019.8 | 964.7 | 1005.7 |
| DEPTH | 1009.6 | 1045.5 | 995.3 | 1010.7 | 956.9 | 997.8 |
| ANGLE | 1218.0 | 1253.8 | 1182.0 | 1197.4 | 1136.0 | 1177.0 |
| NBR_30 | 766.8 | 802.6 | 767.1 | 782.5 | 733.0 | 773.9 |
| RB0020 | -655.8 | -620.0 | -678.9 | -663.5 | -666.0 | -619.9 |
| RB2030 | -1092.4 | -1056.6 | -1090.2 | -1074.9 | -1069.1 | -1028.1 |
| RBB30 | -1228.4 | -1192.6 | -1216.0 | -1200.7 | -1189.2 | -1148.3 |
| DRB | -931.1 | -895.2 | -926.4 | -911.1 | -910.6 | -869.7 |
| DRP | 1058.2 | 1094.1 | 1047.5 | 1062.8 | 1001.3 | 1042.2 |
| RB | -556.3 | -520.4 | -567.5 | -552.2 | -556.9 | -515.9 |
| PB | 57.4 | 93.2 | 50.8 | 66.1 | 39.6 | 80.5 |
| R_S | -795.7 | -759.9 | -795.3 | -780.0 | -783.0 | -742.0 |
| PCA1 | 711.5 | 747.3 | 708.0 | 723.4 | 675.3 | 716.3 |
GLM = model including population structure only; MLM1= model including kinship only; MLM2 = model including population structure and kinship. L, maximized value of the likelihood function for the estimate model.
The model with the lowest BIC (bold) is considered the best choice for that trait.