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. 2013 Nov 5;8(11):e78028. doi: 10.1371/journal.pone.0078028

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© 2013 Han, Zheng

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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The number in a cell means the number of SNPs with significantly different frequencies (with multiple test corrected -values of smaller than 0.01, see Materials and Methods for details) between the two populations of the row and column. There are 11 populations in the HapMap data. ASW, CEU, CHB, CHD, GIH, JPT, LWK, MEX, MKK, TSI, and YRI stand for African ancestry in Southwest USA; Utah residents (CEPH) with Northern and Western European ancestry; Han Chinese in Beijing, China; Chinese in Metropolitan Denver, Colorado; Gujarati Indians in Houston, Texas; Japanese in Tokyo, Japan; Luhya in Webuye, Kenya; Mexican ancestry in Los Angeles, California; Maasai in Kinyawa, Kenya; Toscani in Italia; and Yoruba in Ibadan, Nigeria, respectively. Among the 11 populations, ASW, LWK, MKK and YRI belong to Africa, marked by blue color; CHB, CHD and JPT belong to Asian, marked by yellow color; CEU and TSI belong to European, marked by green color and GIH and MEX belong to America, marked by red color. The dendrogram was generated with the hierarchical clustering implemented in Matlab.

Inline graphic — The number in a cell means the number of SNPs with significantly different frequencies (with multiple test corrected -values of smaller than 0.01, see Materials and Methods for details) between the two populations of the row and column. There are 11 populations in the HapMap data. ASW, CEU, CHB, CHD, GIH, JPT, LWK, MEX, MKK, TSI, and YRI stand for African ancestry in Southwest USA; Utah residents (CEPH) with Northern and Western European ancestry; Han Chinese in Beijing, China; Chinese in Metropolitan Denver, Colorado; Gujarati Indians in Houston, Texas; Japanese in Tokyo, Japan; Luhya in Webuye, Kenya; Mexican ancestry in Los Angeles, California; Maasai in Kinyawa, Kenya; Toscani in Italia; and Yoruba in Ibadan, Nigeria, respectively. Among the 11 populations, ASW, LWK, MKK and YRI belong to Africa, marked by blue color; CHB, CHD and JPT belong to Asian, marked by yellow color; CEU and TSI belong to European, marked by green color and GIH and MEX belong to America, marked by red color. The dendrogram was generated with the hierarchical clustering implemented in Matlab.