Table 3.
Regulons clustered in the sugar metabolism regulatory network subunit.
| Motif | TUs | Main classes |
|---|---|---|
|
TU_832 | Energy metabolism (glycolysis) |
| TU_895 | Transport | |
| TU_1112 | Cell envelope (lipoproteins)/transport | |
| TU_1351 | Hypothetical proteins | |
| TU_1674 | Central intermediary metabolism | |
|
TU_164 | Hypothetical proteins |
| TU_1351 | Hypothetical proteins | |
| TU_1592 | Other categories (prophage‐related) | |
| TU_1674 | Central intermediary metabolism | |
|
TU_198 | Hypothetical proteins |
| TU_485 | Hypothetical proteins | |
| TU_620 | Cell envelope (cell surface) | |
| TU_887 | Transport (multidrug) | |
| TU_1285 | Cell envelope (LPXTG) | |
| TU_1051 | Hypothetical proteins | |
| TU_1351 | Hypothetical proteins | |
| TU_1398 | Transport (PTS)/energy metabolism (sugars) | |
|
TU_1170 | Amino acid biosynthesis (histidine) |
| TU_10 | Central intermediary metabolism (polysaccharides) | |
| TU_434 | Regulatory functions (BglB)/transport (PTS)/energy metabolism (sugars) | |
| TU_1398 | Transport (PTS)/energy metabolism (sugars) | |
| TU_1592 | Other categories (prophage‐related) | |
 |
TU_431 | Cellular processes (chaperones) |
| TU_864 | Hypothetical proteins | |
| TU_10 | Central intermediary metabolism (polysaccharides) | |
| TU_1398 | Transport (PTS)/energy metabolism (sugars) | |
 a
|
TU_434 | Regulatory functions (BglB)/transport (PTS)/energy metabolism (sugars) |
| TU_1398 | Transport (PTS)/energy metabolism (sugars) | |
| TU_1665 | Regulatory functions/transport (PTS)/hypothetical proteins | |
| TU_1705 | Regulatory functions/transport (PTS)/energy metabolism (sugars and general) | |
 a
|
TU_1656 | Energy metabolism/hypothetical proteins |
| TU_434 | Regulatory functions (BglB)/transport (PTS)/energy metabolism (sugars) | |
| TU_1665 | Regulatory functions/transport (PTS)/hypothetical proteins | |
| TU_1705 | Regulatory functions/transport (PTS)/energy metabolism (sugars and general) | |
 |
TU_1230 | Transport |
| TU_1387 | Cell envelope (teichoic acid biosynthesis) | |
| TU_1051 | Hypothetical proteins | |
| TU_1398 | Transport (PTS)/energy metabolism (sugars) |
a.
LacI family motifs.
TUs in bold are shared among multiple different regulons. More details on these proposed regulons can be found at http://www.cmbi.ru.nl/regulatory_network.