Table 10.
Contrast between alleles with the minimum and maximum additive estimates of haplotypes associated1 with feed efficiency
| |
|
|
Allele2 |
|
|
|
|---|---|---|---|---|---|---|
| Indicator | Haplotype | Association | Minimum | Maximum | Contrast3 | P-value |
| RFI |
H03 |
Diet-dependent |
TT - Diet B |
CT - Diet C |
1.25 (0.25) |
2.95E-5 |
| |
H11 |
Diet-dependent |
GGGTC - Diet C |
GGGTC - Diet D |
2.76 (1.11) |
1.11E-5 |
| RADG |
H18 |
Breed-dependent |
GTTT - 3/4AN |
ACTC - ANSM |
0.48 (0.15) |
6.01E-5 |
| RIG |
H03 |
Diet-dependent |
CT - Diet C |
TT - Diet B |
1.68 (0.37) |
2.24E-5 |
| |
H09 |
Breed-dependent |
GAAATGA - SM |
GCAATGA - 3/4AN |
2.97 (1.08) |
9.94E-5 |
| |
H18 |
Breed-dependent |
ACTC - 3/4SM |
ACTC - AN |
1.51 (0.39) |
8.14E-5 |
| EI |
H03 |
Diet-dependent |
TT - Diet A |
CT - Diet C |
1.53 (0.32) |
4.09E-6 |
| |
H11 |
Diet-dependent |
GACTT - Diet C |
GAGTC - Diet C |
1.41 (0.52) |
5.56E-6 |
| H16 | General | GCCG | GTCT | 0.45 (0.14) | 5.10E-5 | |
1P-value < 0.0001.
2Alleles with extreme additive estimates.
3Contrast of additive estimates between alleles with maximum and minimum estimates (standard error).