Table 11.
SNPs [within genes] selected1 for the multi-SNP models and goodness-of-fit by indicator
|
Indicator |
SNPs |
RMSE2 |
MA3 |
|||
|---|---|---|---|---|---|---|
| General association | Breed-dependent association | Diet-dependent association | T | V | ||
| RFI |
rs109064731 |
rs108942504 [TMEM40] |
rs108942504 [TMEM40] |
0.4324 |
0.4479 |
3.45% |
| |
rs109551772 |
rs110576675 |
rs109116282 |
|
|
|
| |
rs110922588 |
rs29024448 [RFC5] |
rs109452133 |
|
|
|
| |
rs111010038 |
rs41568366 [CD3E] |
rs41585447 |
|
|
|
| |
rs111012032 |
rs41659730 |
rs41660789 |
|
|
|
| |
rs29012628 |
rs42456314 [GPC5] |
rs42169106 |
|
|
|
| |
rs41588990 [CNOT6L] |
|
rs42540326 |
|
|
|
| |
rs41654149 |
|
|
|
|
|
| RADG |
rs108964818 [KDELC2] |
rs110280556 [UNC5C] |
rs41627953 |
0.0587 |
0.0686 |
14.35% |
| |
rs108983714 |
rs41574319 |
rs41693645 |
|
|
|
| |
rs109664122 |
rs41583989 [DTNA] |
rs42530614 |
|
|
|
| |
rs109945988 |
rs41590616 [ABCA1] |
rs43474365 [SLC12A2] |
|
|
|
| |
rs109957444 [FAM135B] |
rs41600243 |
|
|
|
|
| |
rs110732787 |
rs41854727 |
|
|
|
|
| |
rs41565199 |
|
|
|
|
|
| |
rs41664711 |
|
|
|
|
|
| |
rs43557756 |
|
|
|
|
|
| RIG |
rs108964818 [KDELC2] |
rs41662450 |
rs29011654 |
0.5624 |
0.6796 |
17.24% |
| |
rs109449042 |
rs41854727 |
rs41612502 |
|
|
|
| |
rs110007573 [FER1L5] |
rs42198649 [SPTBN2] |
rs43687983 |
|
|
|
| |
rs110522962 |
|
|
|
|
|
| |
rs29012628 |
|
|
|
|
|
| |
rs41591189 [G3BP2] |
|
|
|
|
|
| |
rs41654149 |
|
|
|
|
|
| |
rs43557756 |
|
|
|
|
|
| EI |
rs109064731 |
rs108942504 [TMEM40] |
rs109198879 |
0.3131 |
0.3813 |
17.89% |
| |
rs109709275 [GRAMD1B] |
rs110206384 [F8] |
rs109250591 |
|
|
|
| |
rs110122189 |
rs110576675 |
rs42378531 |
|
|
|
| |
rs110922588 |
rs41659730 |
rs43453950 |
|
|
|
| |
rs111010038 |
rs41740922 |
|
|
|
|
| |
rs41624569 |
rs42456314 [GPC5] |
|
|
|
|
| |
rs42332515 |
|
|
|
|
|
| EG |
rs108964818 [KDELC2] |
rs109880264 [GPD1] |
rs110237102 |
0.0491 |
0.0741 |
33.65% |
| |
rs109945988 |
rs41650269 |
rs41611799 |
|
|
|
| |
rs110222344 [WDFY4] |
rs42250803 [SLC7A11] |
rs43196644 |
|
|
|
| |
rs110241960 |
rs42973170 |
rs43371919 [AGAP1] |
|
|
|
| |
rs41574883 |
rs43209887 |
|
|
|
|
| |
rs41589654 [CNNM2] |
|
|
|
|
|
| |
rs41625303 |
|
|
|
|
|
| |
rs41664218 |
|
|
|
|
|
| rs42457639 [GPC5] | ||||||
1P-value < 0.0001.
2RMSE root means square error for the training (T) and validation (V) data sets.
3MA model adequacy = 100% * [1 − (RMSET/RMSEV)].