Table 1.
The solvation free energies of 15 amino acid side-chain analogs calculated with GAFF/AM1-BCC, GAFF-GAAMP, CHARMM27 and CHARMM27-GAAMP, other force fields (AMBER, CHARMM22 and OPLS-AA)60 as well as experiment data are shown. Unit is in kcal/mol.
Mol | GAFF/ AM1-BCC |
GAFF- GAAMP |
CHARMM27 | CHARMM27- GAAMP |
AMBER | CHARMM22 | OPLS-AA | exp |
---|---|---|---|---|---|---|---|---|
Ala | 2.49 | 2.51 | 2.31 | 2.33 | 2.57 | 2.44 | 2.31 | 1.94 |
Val | 2.42 | 2.36 | 1.98 | 2.06 | 2.69 | 2.52 | 2.59 | 1.99 |
Leu | 2.42 | 2.28 | 2.37 | 2.40 | 2.72 | 2.94 | 2.69 | 2.28 |
Ile | 2.43 | 2.35 | 2.04 | 2.13 | 2.84 | 2.67 | 2.73 | 2.15 |
Ser | −3.60 | −3.74 | −4.96 | −3.48 | −4.37 | −4.59 | −4.36 | −5.06 |
Thr | −3.62 | −3.88 | −4.86 | −3.53 | −3.83 | −4.22 | −4.11 | −4.88 |
Phe | −1.29 | −0.87 | −0.53 | −1.14 | 0.10 | 0.09 | −0.54 | −0.76 |
Tyr | −5.86 | −6.17 | −5.16 | −5.82 | −4.23 | −4.46 | −5.25 | −6.11 |
Cys | −0.45 | −0.06 | −0.52 | −1.30 | 0.11 | 0.02 | −1.59 | −1.24 |
Met | 0.04 | 0.19 | 0.27 | −1.00 | 0.91 | 1.08 | −1.27 | −1.48 |
Asn | −8.99 | −7.96 | −8.15 | −7.66 | −7.80 | −7.89 | −8.53 | −9.68 |
Gln | −9.03 | −7.01 | −7.82 | −6.77 | −7.69 | −7.51 | −8.4 | −9.38 |
Trp | −7.34 | −5.72 | −4.57 | −5.43 | −4.88 | −3.57 | −4.44 | −5.88 |
Hid | −8.01 | −9.47 | −10.44 | −8.89 | −8.43 | −10 | −8.87 | −10.27 |
Hie | −8.46 | −9.03 | −10.77 | −8.11 | −8.98 | −10.27 | −9.05 | −10.27 |
AUE | 0.92 | 0.85 | 0.63 | 0.89 | 1.22 | 1.06 | 0.75 |