Table 1.

Samples from Table 2 of Ref. [7] with updated haplogroup classification based on Phylotree Build 15 according to HaploGrep and EMMA.

No.	Related GenBank sample in Ref. [7]	(Updated) haplogroup of related GenBank sample from Ref. [7]	Likely haplogroup [7]a	HaploGrep [12]b	QVc	EMMAd	Costse	Rank 1 results EMMAf	Missing mutationsg	Private mutationsh
1	HM030505	M20	M20	M20	90.8	M20	0.72	HM030505	T16362C T16519C	None
2	HM030542	N10a	N10a	N10a	86.6	N10a	3.06	HM030542	C16111T T16224C T16519C	A16258T T16311C
3	HM030500	N10b	N10b	N10b	100.0	N10b	0.00	N10b	None	None
							0.00	HM030500 (N10b)	None	−309.2C
4	EF093557	E1a1a	M52a	M52a	74.9	M52a	4.62	M52a	None	C16114A T16126C C16218T C16291T T16356C G16391A
5	EF093544	E1a1a	E1a1a	E1a1a	100.0	E1a1a, E1a1a1	0.00	E1a1a	None	None
							0.00	E1a1a1	None	None
							0.00	EF093544 (E1a1a)	None	−309.1C
6	GU296545	U5b2a1b	U5b2a1b	U5b2a1b	93.5	U5b2a1b	0.61	U5b2a1b, GU296545	None	G16319A
7	EU979418	H1a3c	H1a3	H1a3c	90.4	H1a3c	0.39	JQ703419	None	T146C
8	GU903270	J2a1a1a	J2a1a1	J2a1a1a	100.0	J2a1a1a, J2a1a1a2	0.00	J2a1a1a	None	None
							0.00	J2a1a1a2	None	None
							0.00	GU903270 (J2a1a1a)	None	None
9	EU770310	K2b1a1	K2b1a	K2b1a1	94.1	K2b1a1	0.00	EU770310	None	None
10	GU296544	U5b2a1a1	U5b2a1a1	U5b2a1a2	75.1	U5b2a1a1	0.00	GU296544	None	None
11	EU597496	K1a4a1e	K1a(K1a4a1)	K1a4a1e	94.4	K1a4a1e	0.52	K1a4a1e	None	T204C
							0.52	EU597496 (K1a4a1e)	−524.3A −524.4C	T204C
12	AY495209	J1c6	J1c6	J1c + 16261 + 189	92.2	J1c-16261-189, J1c12	0.63	J1c-16261-189	T16126C	None
							0.63	J1c12	T16126C	None
13	EU597496	K1a4a1e	K1a(K1a4a1)	K1a4a1e	94.4	K1a4a1e	1.51	K1a4a1e	None	T204C A272G
							1.51	EU597496 (K1a4a1e)	−524.3A −524.4C	T204C A272G
14	AY882396	U1a1	U1a1	U1a1b	95.1	U1a1b	0.00	JX289842	None	−16193.1C
15	FJ348157	J2a1a1a2	J2a1a	J2a1a1	86.0	J2a1a1	0.00	HQ699438	None	None
16	AY882396	U1a1	U1a1	U1a1b	95.1	U1a1b	0.00	JX289842	−309.2C	−16193.1C
17	AF347006	V7a1, excluded for EMMA [20]	V7a	V7a	76.1	V7a, V7a1	1.55	V7a	None	A73G A95C
							1.55	V7a1	None	A73G A95C
							1.55	JX171078 (V7a1)	−309.2C	A73G A95C
18	AF347006	V7a1, excluded for EMMA [20]	V7a	V7a	85.8	V7a, V7a1	1.55	V7a	None	A73G A95C
							1.55	V7a1	None	A73G A95C
							1.55	JX171078 (V7a1)	−309.2C	A73G A95C
19	EU095550	B2d	B4b(B2d)	B4b	89.0	B2d	0.00	EU095550	None	−16193.1C −309.2C −309.3C
20	FJ770954	M43a	M(M43a)	D4e2a	103.3	D4e2a, M10, M10a, M74, M74b, M74b2, D4j-16311, D4j11, M43a	0.38	D4e2a	None	T16311C −573.2C −573.3C
							0.47	M10	None	T16362C −573.2C −573.3C
							0.47	M10a	None	T16362C −573.2C −573.3C
							0.53	M74	None	−573.1C −573.2C −573.3C
							0.53	M74b	None	−573.1C −573.2C −573.3C
							0.53	M74b2	None	−573.1C −573.2C −573.3C
							0.53	D4j-16311	None	−573.1C −573.2C −573.3C
							0.53	D4j11	None	−573.1C −573.2C −573.3C
							0.53	FJ770954 (M43a)	−309.1C	−573.1C −573.2C −573.3C
							0.53	JQ702232 (M74b2)	−309.1C	−573.1C −573.2C −573.3C
							0.63	AP008834 (D4e2a)	None	T16311C T16519C −573.2C −573.3C
							0.63	AP008468 (D4e2a)	−573.4C	T16311C T16519C
21	HM030520	M74b	M74	D4j1b2	79.8	M74b	2.71	HM030520	C16214T	T16093C T16172C T16297C
22	AF347006	V7a1, excluded for EMMA [20]	V7a	V7a	90.7	V7a, V7a1	0.80	V7a	None	A95C
							0.80	V7a1	None	A95C
23	AY495306	V-@72	HV(V)	V + @72	100.0	V-@72, V1a1, V1a, V1a1b	0.00	V-@72	None	None
							0.25	AY495306	−309.1C	T16519C
24	HQ165756	sample not in GenBank anymore	HV1(HV1b)	HV1b3	96.0	HV1b3	0.00	JQ704284	None	None
25	AY339515	Z1a1a	Z1a1a	Z1a	100.0	Z1a, Z1a1, Z1a1a, Z1a2	0.00	Z1a	None	None
							0.00	AY339515 (Z1a1a)	−309.1C	None
26	EF660967	J2a2a, excluded for EMMA [20]	J2a2a	J2a2a	86.8	J2a2a	0.00	JQ797922	None	None

^aLikely haplogroup assigned in Ref. [7] based on Phylotree Build 13.

^bHaplogroup classification by HaploGrep using Phylotree Build 15.

^cQuality value assigned by HaploGrep.

^dHaplogroups of rank 1 results estimated by EMMA.

^eEstimated costs by EMMA; the default cost range of 0.3 was applied for all calculations.

^fSource for rank 1 haplogroups by EMMA; Haplogroup labels indicate virtual haplotypes from Phylotree, GenBank accession numbers indicate mtGenomes.

^gMutations within the test profile's range that are not present in the test profile but in the database profile.

^hMutations within the test profile's range that are present in the test profile but absent in the database profile.