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. Author manuscript; available in PMC: 2014 Nov 1.
Published in final edited form as: J Neurochem. 2013 Sep 30;127(4):10.1111/jnc.12433. doi: 10.1111/jnc.12433

Table 2.

Primers for real-time quantitative PCR.

Gene Sequence Amplicon (bp) Tm (°C)
COX1 F: 5′-GCCTTTGCTTCAAAACGAGA-3′ 105 58
R: 5′-GGTTGGTTCCTCGAATGTGT-3′
COX2 F: 5′-TCTCCCCTCTCTACGCATTC-3′ 161 59
R: 5′-CAGGTTTTAGGTCGTTTGTTG-3′
COX3 F: 5′-ACTTCACCATCCTCCAAGC-3′ 151 59
R: 5′-TGTCGTAGTAGGCAAACAATAAGG-3′
COX4i1 F: 5′-TCTACTTCGGTGTGCCTTCG-3′ 253 59.5
R: 5′-ACTCATTGGTGCCCTTGTTC-3′
COX5a F: 5′-GGAGTTGCGTAAAGGGATGA-3′ 247 60
R: 5′-CACTTTGTCAAGGCCCAGTT-3′
COX5b F: 5′-GGAGGTGGTGTCCCTACTGA-3′ 241 59.5
R: 5′-CAGCCAGAACCAGATGACAG-3′
COX6a1 F: 5′-TCAACGTGTTCCTCAAGTCGC-3′ 115 60
R: 5′-AGGGTATGGTTACCGTCTCCC-3′
COX6b F: 5′-ATGGCCGAAGACATCAAGAC-3′ 250 60
R: 5′-CAGGAAATGTGCCTTCTGCT-3′
COX6c F: 5′-AGCGTCTGCGGGTTCATA-3′ 154 60
R: 5′-GCCTGCCTCATCTCTTCAAA-3′
COX7a2 F: 5′-GAGGACCATCAGCACCACTT-3′ 234 59.5
R: 5′-TGGAGACTGGGATGACGAC-3′
COX7b F: 5′-CGAAGCATTCAGCAAGTGGT-3′ 209 59.5
R: 5′-TGGCATGACTACTGATCTCTCC-3′
COX7c F: 5′-TCTGCCTTCCGTCTCTGC-3′ 145 60
R: 5′-AGAAAGGAGCAGCAAATCCA-3′
COX8a F: 5′-TCCTGCTTCGTGTGTTGTCT-3′ 70 59
R: 5′-TCCCGCTTCTTGTAGCTTTC-3′
TFAM F: 5′-CAGGGCTGCAATTTTCCTAA-3′ 141 58
R: 5′-CCGAAGTGTTTTTCCAGCAT-3′
TFB1M F: 5′-AAGATGGCCCTTTCGTTTATGG-3′ 102 59
R: 5′-GACTGTGCTGTTTGCTTCCTG-3′
TFB2M F: 5′-CCAAAACCCATCCCGTCAAAT-3′ 135 59
R: 5′-AAGGGCTCCAAATGTGGAATAAA-3′
SURF1 F: 5′-GGTTCCTGCTTTTAATCCCTGC-3′ 119 61
R: 5′-GATGGGCTCAGCCATGACT-3′
Sp4 F: 5′-TTGCAGCAAGGCCAGCAGACC-3′ 130 63
R: 5′-GCTTCTTCTTTCCTGGTTCACTGCT-3′
NT3 F: 5′-TCACCACGGAGGAAACGCTAT-3′ 104 61
R: 5′-TCAATGGCTGAGGACTTGTCG-3′
Actb F: 5′-GGCTGTATTCCCTCCATCG-3′ 154 59.5
R: 5′-CCAGTTGGTAACAATGCCATGT-3′
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