Table 1. Primers used for amplifying the cDNA and genomic DNA of c-type and g-type lysozymes and expression analysis in Asian seabass.
Primer name | Primer sequence (5′-3′) | Annealing temperature (°C) | Application |
---|---|---|---|
(c-type)-A | GCAGCGAGCTTCTGACTGATGAT | 60 | cDNA 3′ RACE |
(c-type)-B | TTACACCCCACAACCTGACACATA | 60 | cDNA 5′ RACE |
g(c-type)-F | ACATTTGATCCAGCAGAGAATACA | 57 | Amplified genomic DNA |
g(c-type)-R | CACCCCACAACCTGACACA | ||
r(c-type)-R | GCAGCGAGCTTCTGACTGATGAT | 55 | Real-time PCR |
r(c-type)-F | ATTACACCCCACAACCTGACACATAG | ||
e(c-type)-F | CCGAATTCCATGAGGGGTCTGCT | 57 | Expression in E. coil |
e(c-type)-R | CGAGCTCAGTTACACCCCACAACC | ||
snp(c-type)-F | CATACTTATTAGCGTCCTTGC | 55 | SNP PCR |
snp(c-type)-R | CTATCTACAGCCACATCCACC | ||
(g-type)-A | AGAGTCCAGGGCTGGAAAT | 60 | cDNA 3′ RACE |
(g-type)-B | TGTACCACTGAGCTCTGGC | 60 | cDNA 5′ RACE |
g(g-type)-F | ATGGGTGGGTGCTTTTACCTTCTT | 57 | Amplified genomic DNA |
g(g-type)-R | AGCCGTTGCTTTTGTACCACTGAG | ||
r(g-type)-F | AGAGTCCAGGGCTGGAAAT | 55 | Real-time PCR |
r(g-type)-R | TGTACCACTGAGCTCTGGC | ||
e(g-type)-F | CGAATTCCATGGGTTATGGAGACATCA | 58 | Expression in E. coil |
e(g-type)-R | TCTCGAGCTAAAAGCCGTTGCTTTTG | ||
snp(g-type)-F | TTGCGATAATGACTGACTAATG | 55 | SNP PCR |
snp(g-type)-R | TCAACCTACAGAAATGGGAAT |
Note: Restriction site is underline