Table 2. Distribution of genotypes and allele frequency for each SNP locus in two lysozyme genes in control and disease resistance groups of Asian seabass.
| SNP |
Genotype (individual No.)
|
Allele frequency (Number)
|
|||||
|---|---|---|---|---|---|---|---|
| Control | Disease resistance | X2 | Allele | Control | Disease resistance | X2 | |
| c-type SNP1 | |||||||
| CC (n=269) | 125 | 144 | 8.48 | C | 364 | 257 | 24.83 |
| CT (n=143) | 114 | 29 | (p<0.05) | T | 114 | 33 | (p<0.005) |
| TT (n=2) | 0 | 2 | |||||
| c-type SNP2 | |||||||
| CC (n=44) | 27 | 17 | 13.04 | C | 122 | 74 | 10.08 |
| CT (n=108) | 68 | 40 | (p<0.005) | T | 226 | 204 | (p<0.05) |
| TT (n=161) | 79 | 82 | |||||
| g-type SNP1 | |||||||
| AA (n=223) | 107 | 116 | 6.06 | A | 232 | 257 | 8.69 |
| AC (n=69) | 18 | 25 | (p<0.05) | C | 70 | 111 | (p<0.05) |
| CC (n=43) | 26 | 43 | |||||
| g-type SNP2 | |||||||
| AA (n=239) | 112 | 127 | 6.49 | A | 259 | 310 | 6.04 |
| AG (n=91) | 35 | 56 | (p<0.05) | G | 43 | 60 | (p<0.05) |
| GG (n=6) | 4 | 2 | |||||
p < 0.05 was considered to be statistically significant.