Table 4.
Possible locations of the 6-mer motif along S 11, together with the corresponding motifs and their position weight matrix scores expressed as odds ratios. The last column lists the odds ratios normalized to have a sum of 1.
Site | 6-mer | Odds Ratio | PNorm |
---|---|---|---|
1 | CATGCC | 0.153 | 0.004 |
2 | ATGCCC | 0.850 | 0.021 |
3 | TGCCCT | 0.664 | 0.016 |
4 | GCCCTC | 0.944 | 0.023 |
5 | CCCTCA | 0.254 | 0.006 |
6 | CCTCAA | 0.843 | 0.021 |
7 | CTCAAG | 0.609 | 0.015 |
8 | TCAAGT | 0.717 | 0.018 |
9 | CAAGTG | 0.613 | 0.015 |
10 | AAGTGT | 0.426 | 0.011 |
11 | AGTGTG | 0.967 | 0.024 |
12 | GTGTGC | 0.546 | 0.014 |
13 | TGTGCA | 0.594 | 0.015 |
14 | GTGCAG | 4.034 | 0.100 |
15 | TGCAGA | 0.251 | 0.006 |
16 | GCAGAT | 1.084 | 0.027 |
17 | CAGATT | 0.343 | 0.009 |
18 | AGATTG | 1.812 | 0.045 |
19 | GATTGG | 1.128 | 0.028 |
20 | ATTGGT | 0.408 | 0.010 |
21 | TTGGTC | 1.194 | 0.030 |
22 | TGGTCA | 0.888 | 0.022 |
23 | GGTCAC | 1.005 | 0.025 |
24 | GTCACA | 0.596 | 0.015 |
25 | TCACAG | 5.888 | 0.146 |
26 | CACAGC | 0.064 | 0.002 |
27 | ACAGCA | 0.569 | 0.014 |
28 | CAGCAT | 0.569 | 0.014 |
29 | AGCATT | 0.381 | 0.009 |
30 | GCATTT | 2.024 | 0.050 |
31 | CATTTC | 0.474 | 0.012 |
32 | ATTTCA | 1.317 | 0.033 |
33 | TTTCAA | 4.293 | 0.107 |
34 | TTCAAG | 2.475 | 0.061 |
35 | TCAAGG | 1.279 | 0.032 |