Table 2. PRIMERS FOR REAL-TIME RT-PCR.
Primer set I |
Primer set II |
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Accession nr | Target Array (nt) | Forward(5’-3’) | Nucleotide Position (nt) | Reverse (5’-3’) | Nucleotide Position (nt) | Product (bp) | Forward(5’-3’) | Nucleotide Position (nt) | Reverse (5’-3’) | Nucleotide Position (nt) | Product (bp) | ||
AF260922 | P1311-1375 | Agaacaagccaccctacacg | 1214 | Cccactggatgatgactcact | 1342 | 129 | Aggctgtgtctgttggactg | 66 | Aagtggatgttgccttggtt | 165 | 100 | ||
NM_020083 | 3625-3689 | agagcacggtacctgcagac | 3604 | tggtagggagctggagagaa | 3698 | 95 | tgccttctgaatctgatgactc | 3184 | agtcaatggaatccccatca | 3290 | 107 | ||
NM_012530 | 1102-1166 | cttccgaggtcgaacaggt | 1100 | tacttctgcgcagggatcat | 1214 | 115 | atctggcacaacgacaacaa | 718 | ggcggaaaacttccttcata | 823 | 106 | ||
U05675 | 1097-1161 | accgaggccaacaagtacc | 1093 | tgtggatggtcatggttctg | 1207 | 115 | acggaatactgccacactcc | 664 | acctcccttccgaatgatct | 753 | 90 | ||
U05675 | 1097-1161 | cgaaatggaggactggaaag | 1032 | gccagcagtccctttgtact | 1146 | 115 | tgctacagggtgtgagttgc | 324 | aggtgaccgaagaggtctca | 439 | 116 | ||
AF053990 | 655-719 | ccactgttgacaggagcatc | 608 | tcacttggagctcacagttct | 712 | 105 | cggcttatatccatgcatcc | 121 | tccttggaggcttcaacatc | 226 | 106 | ||
D00688 | 1460-1524 | aaggatgttccagccattga | 1441 | ccacagaagtggaaacacca | 1540 | 100 | accagagcttccacctgaga | 858 | tcatgcagccacaatagtcc | 979 | 122 | ||
J00793 | 347-411 | ggaactggctgagtgtttcc | 351 | tcctcgtctgtcacatgctc | 461 | 111 | gctgcctttgacatgtttga | 133 | ttcctctttggtgggtgtct | 234 | 102 | ||
AF091565 | 278-342 | ctggttcaaacatcccttgc | 280 | acaggccagtttcaggacag | 378 | 99 | cccaggaagaccatctcctt | 73 | catgctcaggagcacacact | 162 | 90 | ||
M75148 | 2123-2187 | catcttgaggacaggcgtta | 2089 | cagcacatgcctcactccta | 2184 | 96 | cagccctaggagcttgtcag | 1904 | tggcaaagctacatgtatccag | 2003 | 100 | ||
PBGD | – | – | – | – | – | – | atgtccggtaacggcggc | 1 | caaggttttcagcatcgctacca | 135 | 135 |
Primer set I contained the sequence of the oligonucleotide as spotted on the microarray; Primer set II contained a fragment of the gene which was not present on the array; target array, position oligonucleotide fragment as spotted on the microarray; PBGD, house keeping gene porphobilinogen deaminase;