. Author manuscript; available in PMC: 2014 Jan 25.

Published in final edited form as: Nature. 2013 Jul 3;499(7459):471–475. doi: 10.1038/nature12228

Table 1. Genetic variation summary by species and subspecies.

Summary statistics for each species and subspecies.

Genus	Scientific name Species/subspecies	Common name	N	Mean Coverage	Fixed Sites to Human reference	No. of SNVs^a	Mean SNVs per Individual^a	No. of Singletons^b	Ancestry Informative Markers (AIMs)^c	Ne (10-3)^d
Homo		Non-African	6	18.3	386,974	5,887,443	2,639,546	1,379,448	12,316	9.7 – 19.5
		African	3	20.9	632,253	6,309,453	3,203,178	2,448,454	12,316	13.9 – 27.9
	Homo sapiens	Humans	9	19.2	224,660	9,172,573	3,061,604	3,827,902	-	13.1 – 16.2

Pan	Pan troglodytes ellioti	Nigerian-Cameroon	10	16.7	25,017,403	12,605,585	4,816,435	2,695,109	2,213	18.5 – 37.0
	Pan troglodytes schweinfurthii	Eastern	6	28.7	25,126,506	11,264,879	4,843,530	2,228,396	1,265	19.7 – 39.5
	Pan troglodytes troglodytes	Central	4	23.8	25,080,750	11,820,858	4,983,933	3,948,347	619	24.4 – 48.7
	Pan troglodytes verus	Western^*	4	27.3	26,832,247	4,729,933	2,411,501	1,481,079	145,548	9.8 – 19.5
	Pan troglodytes	Common Chimpanzees	24	22.5	24,087,088	27,153,659	5,693,903	10,352,931	149,645	30.9 – 61.8

Pan	Pan paniscus	Bonobos	13	27.5	27,068,299	8,950,002	2,738,755	3,159,889	-	11.9 – 23.8

Gorilla	Gorilla beringei graueri	Eastern lowland	3	22.8	34,537,496	3,866,117	2,578,328	484,482	317,028	12.2 – 24.3
	Gorilla gorilla diehli	Cross river	1	17.6	35,553,861	2,585,360	2,585,360	165,482	35,693	14.9 – 29.8
	Gorilla gorilla gorilla	Western lowland	23	17.8	31,602,620	17,314,403	6,410,662	2,797,388	19,902	26.8 – 53.5
		Gorillas	27	18.3	31,376,203	19,177,989	6,492,831	3,447,352	372,623	28.4 – 56.9

Pongo	Pongo abellii	Sumatran	5	28.7	62,880,923	14,543,573	7,263,256	5,681,303	1,132,808	27.5 – 55.0
	Pongo pygmaeus	Bornean	5	25.8	64,249,235	10,321,213	5,763,354	3,555,596	1,132,808	19.5 – 39.0
		Orangutans	10	27.3	60,661,869	24,309,920	9,338,148	6,409,648	-	42.3 – 84.6

		All	83	23.0	83,954,672	83,580,213	-	-	-	-

Polymorphic variants found in each species/subspecies after substracting fixed sites.

Singletons and doubletons calculated combining all the samples within the species.

Variants only found in a single group within each species.

Calculated from Θw. μ = 1e-9 - 0.5e-9 mut·bp-1·yr-1 and g = 25 for Homo and Pan, 19 for Gorilla and 26 for Pongo.

Hybrid sample Donald and 4 related gorillas were excluded.