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. 2013 Nov 11;8(11):e78605. doi: 10.1371/journal.pone.0078605

Table 6. Rule summary for the 1st degree classifiable and unclassifiable peptides employing the simplified machine learning approach with understandable attributes (ML-simple) for the prediction of IVIG binding.

Attributea 1st degree classifiable 1st degree unclassifiable
Low\highb Classified correctlyc Low\highb Classified correctlyc
Aromaticity High 74.3% Low 53.3%
Polarity Low 58.7% High 27.5%
Frequency of arginine High 31.5% Low 34.0%
Frequency of tyrosine High 20.7% Low 16.9%
Summary factor 5 High 15.1% Low 15.2%
Antigenicity High 7.3% Low 8.7%
Hydrophobicity Low 4.7% High 6.5%
Frequency of histidine Low 3.9%
Frequency of cysteine Low 10.4%
Preference for reverse turns High 10.4%
Occurrence in turns Low 10.4%
Frequency of alanine High 8.7%
a

Details on the attributes are given in File S3 (2. Attributes for Machine Learning).

b

Whether the rules state the value of the attribute should be high or low for a peptide to be binding.

c

The percentage of binding peptides that were correctly classified by rules containing the attribute. This percentage roughly corresponds to the importance of the attribute.