Table 6. Rule summary for the 1st degree classifiable and unclassifiable peptides employing the simplified machine learning approach with understandable attributes (ML-simple) for the prediction of IVIG binding.
Attributea | 1st degree classifiable | 1st degree unclassifiable | ||
Low\highb | Classified correctlyc | Low\highb | Classified correctlyc | |
Aromaticity | High | 74.3% | Low | 53.3% |
Polarity | Low | 58.7% | High | 27.5% |
Frequency of arginine | High | 31.5% | Low | 34.0% |
Frequency of tyrosine | High | 20.7% | Low | 16.9% |
Summary factor 5 | High | 15.1% | Low | 15.2% |
Antigenicity | High | 7.3% | Low | 8.7% |
Hydrophobicity | Low | 4.7% | High | 6.5% |
Frequency of histidine | Low | 3.9% | ||
Frequency of cysteine | Low | 10.4% | ||
Preference for reverse turns | High | 10.4% | ||
Occurrence in turns | Low | 10.4% | ||
Frequency of alanine | High | 8.7% |
Details on the attributes are given in File S3 (2. Attributes for Machine Learning).
Whether the rules state the value of the attribute should be high or low for a peptide to be binding.
The percentage of binding peptides that were correctly classified by rules containing the attribute. This percentage roughly corresponds to the importance of the attribute.