Table A2.
Putative orphan LuxR encoding genes that do not have an adjacent luxI on the chromosome.
| Strains | luxR gene locus |
|---|---|
| Citreicella sp. 357 | C357_03001 |
| Citreicella sp. SE45 | CSE45_1818 |
| CSE45_4969 | |
| Dinoroseobacter shibae DFL 12 | Dshi_1550 |
| Dshi_1815 | |
| Dshi_1819 | |
| Jannaschia sp. CCS1 | Jann_1153 |
| Jann_2301 | |
| Jann_3193 | |
| Loktanella sp. SE62 | LSE62_3779 |
| Maritimibacter alkaliphilus HTCC2654 | RB2654_10983 |
| RB2654_03619 | |
| Oceanibulbus indolifex HEL-45 | OIHEL45_01695 |
| OIHEL45_02625 | |
| OIHEL45_13145 | |
| Oceanicola batsensis HTCC2597 | OB2597_03302 |
| Oceanicola granulosus HTCC2516 | OG2516_08027 |
| Oceanicola sp. S124 | OS124_010100017942 |
| OS124_010100007975 | |
| Octadecabacter antarcticus 238 | OA238_3367 |
| OA238_3623 | |
| Octadecabacter antarcticus 307 | OA307_2044 |
| Pelagibaca bermudensis HTCC2601 | R2601_24964 |
| R2601_10664 | |
| Phaeobacter gallaeciensis 2.10 | PGA2_c15480 |
| PGA2_c18970 | |
| Phaeobacter gallaeciensis DSM 17395 | PGA1_c15590 |
| Phaeobacter gallaeciensis ANG1 | ANG1_869 |
| Phaeobacter sp. Y4I | RBY4I_896 |
| Rhodobacterales bacterium HTCC2083 | RB2083_1776 |
| Rhodobacterales bacterium HTCC2150 | RB2150_02239 |
| Roseobacter denitrificans OCh 114 | RD1_3967 |
| Roseobacter litoralis Och 149 | RLO149_c004710 |
| RLO149_c036470 | |
| Roseobacter sp. AzwK-3b | RAZWK3B_15865 |
| Roseobacter sp. CCS2 | RCCS2_00422 |
| Roseobacter sp. GAI101 | RGAI101_670 |
| Roseobacter sp. MED193 | MED193_03932 |
| Roseobacter sp. R2A57 | R2A57_3570 |
| Roseobacter sp. SK209-2-6 | RSK20926_03972 |
| RSK20926_18892 | |
| Roseovarius nubinhibens ISM | ISM_09921 |
| ISM_15650 | |
| Roseovarius sp. TM1035 | RTM1035_08219 |
| Roseovarius sp. 217 | ROS217_20327 |
| Ruegeria pomeroyi DSS-3 | SPO1974 |
| Ruegeria sp. KLH11 | RKLH11_1390 |
| Ruegeria sp. R11 | RR11_2316 |
| Ruegeria sp. TM1040 | TM1040_3102 |
| TM1040_1212 | |
| Ruegeria sp. TW15 | RTW15_010100007191 |
| Ruegeria sp. TrichCH4B | SCH4B_0463 |
| SCH4B_4179 | |
| SCH4B_4368 | |
| SCH4B_4682 | |
| Ruegeria lacuscaerulensis ITI-1157 | SL1157_2844 |
| Sagittula stellata E-37 | SSE37_06082 |
| Sulfitobacter sp. EE-36 | EE36_03628 |
| Sulfitobacter sp. NAS-14.1 | NAS141_08556 |
| Thalassiobium sp. R2A62 | TR2A62_0664 |
Homologs of LuxR encoding genes were determined using BlastP with the autoinducer binding domain sequence from Pfam (PF03472) on Roseobase www.roseobase.org).