Table 1.
Gene symbol | ID | Chromsome site | miRNA | Target sequence | micrrna score | TargetScan Convert+ score* | Conserved condition |
---|---|---|---|---|---|---|---|
ITGA1 | Integrin alpha 1 | chr5 (q11.2) | hsa-miR-200b | UCUUU-GCUGAGCAGCU | −1.2825 | 99 | P |
hsa-miR-200c | CAAUUUUCCAUUUCAGUAUU | −1.2825 | 99 | P | |||
hsa-miR-429 | UUUUCCAUUUCAGUAUU | −1.2816 | 99 | P | |||
hsa-miR-135a | UUGUCAUGAAAAGCCAU | −0.9526 | 95 | P | |||
hsa-miR-203 | CAUUUCA | −1.0219 | 86 | P | |||
hsa-miR-329 | GCUUUUUAGGUGUGU | −0.9223 | 95 | P | |||
hsa-miR-362-3p | ACUGCUU-UUUAGGUGUGU | −0.919 | 96 | P | |||
hsa-miR-135b | UUGUCAUGAAAAGCCAU | −0.9526 | 96 | P | |||
hsa-miR-10a | CAACUCCUUGG---UACAGGGU | −0.6762 | 85 | P | |||
hsa-miR-10b | AACUCCUUGGUACAGGGU | −0.3367 | 86 | P | |||
ITGA2 | integrin alpha2 | chr5 (q11.2) | hsa-miR-195 | UUUAUGCUGCU | −0.2991 | 86 | C |
hsa-miR-16 | AUUUA--UGCUGCU | −0.2799 | 88 | C | |||
hsa-miR-15a | UCCAAGCAUG-ACAACUU | −0.2039 | 83 | C | |||
hsa-miR-15b | UCAAUUUAUGCUGCU | −0.3017 | 81 | C | |||
hsa-miR-497 | UCAAUUUAUGCUGCU | −0.3068 | 82 | C | |||
hsa-miR-424 | UGCUGCU | −0.3042 | 81 | C | |||
hsa-miR-27a | ACUGUGA | −0.712 | 88 | C | |||
hsa-miR-27b | ACUGUGA | −0.712 | 88 | C | |||
has-miR-19a | AAUAUUUCA---AUUUGCAC | −0.844 | 86 | C | |||
has-miR-19b | AAUAUUUCA---AUUUGCAC | −0.844 | 86 | C | |||
ITGA3 | Integrin alpha3 | chr17(q21.33) | has-miR-199a-5p | ACACUGG | −0.4432 | 81 | C |
has-miR-199b-5p | ACACUGG | −0.4432 | 81 | C | |||
has-miR-181a | AGCGACA-C-UUGAAUGU | −0.6484 | 87 | C | |||
has-miR-181b | AGCGACACU--UGAAUGU | −0.6197 | 87 | C | |||
has-miR-181c | AGCGACA-CUUGAAUGU | −0.6483 | 87 | C | |||
has-miR-181d | AGCGACACU--UGAAUGU | −0.6197 | 87 | C | |||
hsa-miR-101 | CAUGGUACUGU | −0.2294 | 84 | C | |||
hsa-miR-506 | GUGCCUU | −0.5015 | 83 | C | |||
hsa-miR-124 | CUCCUUGUGCCUU | −0.505 | 83 | C | |||
ITGA4 | integrin alpha4 | chr2(q31.3) | has-miR-30a | UUUAAAAGACACUGUUUAC | −0.8 | 95 | C |
has-miR-30b | UGUUUAC | −0.8036 | 92 | C | |||
has-miR-30c | UGUUUAC | −0.8036 | 92 | C | |||
has-miR-30d | UGUUUAC | −0.8036 | 93 | C | |||
has-miR-30e | UAAAAGACACUGUUUAC | −0.8036 | 95 | C | |||
ITGA5 | integrin alpha5 | chr12(q13.13) | has-miR-26a | CCAGCCCAGAGACAUACUUGA | −0.6745 | 84 | C |
has-miR-26b | GACAUACUUGA | −0.6745 | 84 | C | |||
hsa-miR-128 | CCCAUGCACUGUG | −0.4134 | 92 | C | |||
hsa-miR-152 | CAUGCACUG | −0.2845 | 91 | C | |||
has-miR-148a | UGCACUG | −0.2845 | 91 | C | |||
has-miR-148b | AUGCACUG | −0.2845 | 91 | C | |||
has-miR-367 | CUGUUGC--AAGUGCAAU | −1.0428 | 98 | C | |||
has-miR-92a | CUGUUGCAAGUGCAAU | −1.0535 | 97 | C | |||
has-miR-92b | CUGUUGCAAGUGCAAU | −2.107 | 97 | C | |||
has-miR-363 | GUUGCAAGUGCAAU | −1.0535 | 97 | C | |||
has-miR-25 | CUGUUGCAAGUGCAAU | −1.0561 | 97 | C | |||
has-miR-32 | AACUCUGUUGCAAGUGCAAU | −1.0482 | 97 | C | |||
ITGA6 | integrin alpha6 | chr2(q31.1) | hsa-miR-19a | GUUUUGCAC | −0.4404 | 84 | C |
hsa-miR-19b | GUUUUGCAC | −0.4404 | 84 | C | |||
has-miR-367 | CUAAAUGUGCAAU | −0.9819 | 88 | C | |||
hsa-miR-32 | AAC-UA--AAUGUGCAAU | −0.9789 | 88 | C | |||
hsa-miR-92a | AAAUGUGCAAU | −0.9819 | 85 | C | |||
hsa-miR-25 | GUCUUAAACUAAAUGUGCAAU | −0.9758 | 84 | C | |||
hsa-miR-363 | AAUGUGCAAU | −0.9789 | 84 | C | |||
hsa-miR-92b | GUGCAAU | −0.9819 | 84 | C | |||
has-miR-30a | UGUUUAC | −1.2059 | 87 | C | |||
has-miR-30b | AAUAUAUUUUGUUUAC | −1.2028 | 87 | C | |||
has-miR-30c | AAAAUAUAUUUUGUUUAC | −1.2028 | 87 | C | |||
has-miR-30d | UGUUUAC | −1.2075 | 87 | C | |||
has-miR-30e | UGUUUAC | −1.2059 | 86 | C | |||
has-miR-143 | GUUAAAAAUG--UCAUCUC | −0.9666 | 94 | C | |||
ITGA7 | integrin alpha7 | chr12(q13.2) | hsa-miR-124 | UCCCCGGAAGUGCCUU | −0.5703 | 95 | C |
hsa-miR-506 | UCCCCGGAA--GUGCCUU | −0.5389 | 96 | C | |||
ITGA8 | integrin alpha8 | chr10 (p13) | hsa-miR-8 | AGAAGACCAAAG | −0.3072 | 97 | P |
hsa-miR-199a-5p | AACACUGG | −0.571 | 89 | P | |||
hsa-miR-199b-5p | CAAAGACCUCAAACACUGG | −0.5746 | 88 | P | |||
ITGA9 | integrin alpha9 | chr3 (p22.2) | hsa-miR-125a-5p | GCAUGGUCAA--CCCUCAGGG | −0.6957 | 80 | C |
hsa-miR-125b | CUCAGGG | −0.6957 | 80 | C | |||
ITGA10 | integrin alpha10 | chr1(q21.1) | hsa-miR-22 | AGUCCUCC--CUGGCAGCU | −0.4393 | 88 | C |
ITGA11 | integrin alpha11 | chr15(q23) | hsa-miR-148a | UCUGGAAUGCACUG | −0.5994 | 96 | C |
hsa-miR-148b | UCUGGAAUGCACUG | −0.5994 | 96 | C | |||
hsa-miR-152 | UCUGGAAUGCACUG | −0.5994 | 96 | C | |||
ITGAD | integrin alpha D | chr16(p11.2) | hsa-miR-382 | AAUCAACUUACAUGGAAACAACU | −0.9143 | 80 | P |
hsa-miR-18a | GUGCUA-A-GCACCUU | −0.1672 | 85 | P | |||
hsa-miR-190 | UAAUGU-UUUUACAUAUC | −0.6222 | 88 | P | |||
hsa-miR-190b | UAAUGUUUUUACAUAUC | −0.2668 | 89 | P | |||
hsa-miR-365 | UAUUUGUGGGCAUU | −0.8989 | 94 | P | |||
ITGAE | integrin alpha E | chr17(p13.2) | hsa-miR-382 | AAUCAACUUACAUGGAAACAACU | −0.9143 | 80 | P |
hsa-miR-18a | GUGCUA-A-GCACCUU | −0.1672 | 85 | P | |||
hsa-miR-190 | UAAUGU-UUUUACAUAUC | −0.6222 | 88 | P | |||
hsa-miR-190b | UAAUGUUUUUACAUAUC | −0.2668 | 89 | P | |||
hsa-miR-365 | UAUUUGUGGGCAUU | −0.8989 | 94 | P | |||
ITGAL | integrin alpha L | chr16(p11.2) | hsa-miR-23a | AAUGUGA | −0.9167 | 99 | C |
hsa-miR-23b | UUAU-CCAAUAAAUGUGA | −0.9167 | 99 | C | |||
ITGAM | integrin alpha M | chr16(p11.2) | hsa-miR-224 | UCAAU-GUGACUU | −0.1207 | 90 | P |
hsa-miR-539 | CACCA---AU-AUUUCUC | −1.136 | 98 | P | |||
hsa-miR-186 | AUUCUUU | −0.8343 | 85 | P | |||
hsa-miR-342-3p | AUUCCAUUGUGUGAG | −0.7084 | 80 | P | |||
hsa-miR-340 | UGGUAGCA-UACUUUAUA | −0.77 | 90 | P | |||
hsa-miR-185 | AGCAGC--UUCUCUCC | −0.2405 | 87 | P | |||
ITGAV | integrin alpha V | chr2 (q32.1) | hsa-miR-142-3p | ACACUAC | −0.9501 | 95 | C |
hsa-miR-135a | AUAUCAUAAUGCUUAAAGCCAU | −0.6978 | 88 | C | |||
hsa-miR-135b | AUAUCAUAAUGCUUAAAGCCAU | −0.6978 | 90 | C | |||
hsa-miR-25 | CAAGUGCAAU | −0.8261 | 94 | C | |||
hsa-miR-367 | GUCAUUGUUCUCAAGUGCAAU | −0.8046 | 96 | C | |||
hsa-miR-363 | AUUGUUCUCAAGUGCAAU | −0.8118 | 94 | C | |||
hsa-miR-92a | CAAGUGCAAU | −0.8261 | 94 | C | |||
hsa-miR-92b | CAAGUGCAAU | −0.8261 | 93 | C | |||
hsa-miR-32 | CAUUGUUCUCAAGUGCAAU | −0.8154 | 94 | C | |||
ITGAW | integrin alpha W | not available | not available | ||||
ITGAX | integrin alpha X | chr16(p11.2) | hsa-miR-491-5p | GCGAGUUUUCCCCAC | −0.4861 | 90 | P |
hsa-miR-150 | CUGCUUCCUGUCUUUGGGAG | −0.5063 | 97 | P | |||
hsa-miR-103b | ACAGUUCUGAAU-AUGCUGC | −0.6088 | 99 | P | |||
hsa-miR-425 | AGUGAAUUAGUGUCAU | −0.4593 | 84 | P | |||
hsa-miR-145 | AACUGGA | −0.1668 | 85 | P | |||
hsa-miR-335 | UACCGCUCUUG | −0.2027 | 84 | P | |||
ITGA2B | integrin alpha-IIB | chr17(q21.31) | hsa-miR-24 | GACUGAGCC | −0.4374 | 88 | P |