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. 2013 Dec;54(12):3293–3302. doi: 10.1194/jlr.M043489

TABLE 2.

Calculated biophysical parameters for WT apoA-I and the apoA-I[F225A/V227A/F229A/L230A] mutant

Mutation Helicity Thermal Denaturation Chemical Denaturation ANS Binding
ApoA-I α-Helix Tm (°C) Slopea Cooperativity Index (n) D1/2 (M) Fold Increaseb
WT 59.3 ± 0.5 56.0 ± 0.5 7.8 ± 0.1 6.3 ± 0.4 1.02 ± 0.06 10.2 ± 0.5
F225A/V227A/F229A/L230A 51.7 ± 0.3c 57.8 ± 0.2d 4.0 ± 0.0c 11.4 ± 0.4e 1.01 ± 0.03 6.0 ± 0.4c

Values are means ± SD of 3–4 experiments. Parameters obtained from the indicated measurements are as follows: α-helix is the % α-helical content of the protein as calculated from the molecular ellipticity of the protein sample at 222 nm; Tm, is middle point of the thermal denaturation transition (melting temperature); slope is the calculated slope of the linear component of the thermal denaturation transition, around the melting temperature; cooperativity index n is an indicator of the cooperativity of the thermal unfolding transition and is calculated using the Hill equation the Hill equation n = (log 81)/log(T0.9/T0.1), where T0.9 and T0.1 are the temperatures at which the unfolding transition has reached a fractional completion of 0.9 and 0.1; D1/2 is the guanidine HCl concentration at which the midpoint of the chemical denaturation is achieved; fold increase is the increase in ANS fluorescence in the presence of the protein relative to free ANS in the same buffer.

a

Slope is calculated from the fit of thermal denaturation curve to a Boltzman sigmoidal model curve using the equation [Θ]222 = Bottom + ((Top − Bottom) / (1 = exp((Tm − X) / Slope))). X describes the temperature, and slope describes the steepness of the curve, with a larger value denoting a shallow curve.

b

Fold-increase in signal compared with unbound ANS.

c

P< 0.0001.

d

P< 0.05.

e

P< 0.001.