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. 2013 Nov 13;8(11):e78937. doi: 10.1371/journal.pone.0078937

Table 2. Data collection and refinement statistics.

Crystals of HNP1 mutants
I20A I20A/L25A Y16A/F28A Y16A/I20A/L25A/F28A
Data collection
Wavelength, Å 1.54 1.54 0.98 1.00
Space group P41 C2 H3 H3
Cell parameters
a, b, c, Å 37.7, 37.7, 40.5 75.0, 62.6, 42.5 88.6, 88.6, 54.1 83.8, 83.8, 51.3
α, β, γ, ° 90, 90, 90 90, 99.7, 90 90, 90, 120 90, 90, 120
Molecules/a.u. 2 8 4 4
Resolution, (Å)a 50-1.7 (1.73-1.7) 50-1.66 (1.69-1.66) 50-2.0 (2.03-2.00) 50.0-1.9 (1.93-1.90)
# of reflections
Total 17,297 73,805 58,691 60,651
Unique 8,953 22,465 10,671 10,457
Rmerg b, % 13.9 (67.4) 8.1 (44.8) 10.3 (75.9) 3.6 (96.0)
I/σ 12.7 (2.0) 16.5 (1.6) 21.6 (1.3) 56 (2.2)
Completeness, % 100 (99.0) 98.3 (84.1) 99.5 (98.5) 99.1 (100)
Redundancy 4.8 (3.8) 2.3 (3.3) 5.5 (4.2) 5.8 (5.8)
Refinement Statistics
Resolution, Å 27.6-1.72 20-1.70 18.0-2.00 24.2-1.90
Rc, % 20.1 18.5 19.0 19.9
Rfree d, % 22.9 23.1 22.8 23.6
# of atoms
Protein 470 1,815 900 876
Water 26 209 8 8
Ligand/Ion 6 6 0 0
Overall B value (Å)2
Protein 38.2 28.6 64.8 72.7
Water 46.3 37.8 60.8 67.0
Ligand/Ion 67.6 20.9
Root mean square deviation
Bond lengths, Å 0.015 0.024 0.018 0.007
Bond angles,° 1.6 1.9 1.9 1.33
Ramachandrane
favored, % 94.6 96.8 96.4 94.4
allowed, % 5.4 3.2 3.6 3.6
outliers, % 0.0 0.0 0.0 0.0
PDB code 4LBB 4LBF 4LB1 4LB7
a

Values in parentheses are for highest-resolution shell.

b

R merge = ∑|I - <I>|/∑I, where I is the observed intensity and <I> is the average intensity obtained from multiple observations of symmetry-related reflections after rejections.

c

R = ∑||Fo|- | Fc||/∑|Fo |, where Fo and Fc are the observed and calculated structure factors, respectively.

d

Rfree = defined by by Brünger [68].

e

Calculated with MolProbity [48].