Table 2. Data collection and refinement statistics.
Crystals of HNP1 mutants | ||||||||
I20A | I20A/L25A | Y16A/F28A | Y16A/I20A/L25A/F28A | |||||
Data collection | ||||||||
Wavelength, Å | 1.54 | 1.54 | 0.98 | 1.00 | ||||
Space group | P41 | C2 | H3 | H3 | ||||
Cell parameters | ||||||||
a, b, c, Å | 37.7, 37.7, 40.5 | 75.0, 62.6, 42.5 | 88.6, 88.6, 54.1 | 83.8, 83.8, 51.3 | ||||
α, β, γ, ° | 90, 90, 90 | 90, 99.7, 90 | 90, 90, 120 | 90, 90, 120 | ||||
Molecules/a.u. | 2 | 8 | 4 | 4 | ||||
Resolution, (Å)a | 50-1.7 (1.73-1.7) | 50-1.66 (1.69-1.66) | 50-2.0 (2.03-2.00) | 50.0-1.9 (1.93-1.90) | ||||
# of reflections | ||||||||
Total | 17,297 | 73,805 | 58,691 | 60,651 | ||||
Unique | 8,953 | 22,465 | 10,671 | 10,457 | ||||
Rmerg b, % | 13.9 (67.4) | 8.1 (44.8) | 10.3 (75.9) | 3.6 (96.0) | ||||
I/σ | 12.7 (2.0) | 16.5 (1.6) | 21.6 (1.3) | 56 (2.2) | ||||
Completeness, % | 100 (99.0) | 98.3 (84.1) | 99.5 (98.5) | 99.1 (100) | ||||
Redundancy | 4.8 (3.8) | 2.3 (3.3) | 5.5 (4.2) | 5.8 (5.8) | ||||
Refinement Statistics | ||||||||
Resolution, Å | 27.6-1.72 | 20-1.70 | 18.0-2.00 | 24.2-1.90 | ||||
Rc, % | 20.1 | 18.5 | 19.0 | 19.9 | ||||
Rfree d, % | 22.9 | 23.1 | 22.8 | 23.6 | ||||
# of atoms | ||||||||
Protein | 470 | 1,815 | 900 | 876 | ||||
Water | 26 | 209 | 8 | 8 | ||||
Ligand/Ion | 6 | 6 | 0 | 0 | ||||
Overall B value (Å)2 | ||||||||
Protein | 38.2 | 28.6 | 64.8 | 72.7 | ||||
Water | 46.3 | 37.8 | 60.8 | 67.0 | ||||
Ligand/Ion | 67.6 | 20.9 | – | – | ||||
Root mean square deviation | ||||||||
Bond lengths, Å | 0.015 | 0.024 | 0.018 | 0.007 | ||||
Bond angles,° | 1.6 | 1.9 | 1.9 | 1.33 | ||||
Ramachandrane | ||||||||
favored, % | 94.6 | 96.8 | 96.4 | 94.4 | ||||
allowed, % | 5.4 | 3.2 | 3.6 | 3.6 | ||||
outliers, % | 0.0 | 0.0 | 0.0 | 0.0 | ||||
PDB code | 4LBB | 4LBF | 4LB1 | 4LB7 |
Values in parentheses are for highest-resolution shell.
R merge = ∑|I - <I>|/∑I, where I is the observed intensity and <I> is the average intensity obtained from multiple observations of symmetry-related reflections after rejections.
R = ∑||Fo|- | Fc||/∑|Fo |, where Fo and Fc are the observed and calculated structure factors, respectively.
Rfree = defined by by Brünger [68].
Calculated with MolProbity [48].