Table 2. Acquired DNA copy number aberrations detected by SNP arrays in two osteoblastomas.
Case | Chromosome band | Base pair position (Mb)a | Aberration | Gene |
---|---|---|---|---|
1 | 1p35 | 29.616-30.277 | Deletion | |
1 | 1p35 | 30.479-30.597 | Deletion | |
1 | 1p35 | 30.899-31.179 | Deletion | |
1 | 1p34 | 39.887-39.967 | Deletion | |
1 | 1p34 | 41.552-41.615 | Deletion | |
1 | 1p34 | 45.067-45.139 | Deletion | |
1 | 1p34 | 45.853-45.962 | Deletion | |
1 | 2p12 | 80.608-82.511 | Gain | |
1 | Chromosome 6 | 0.090-170.919 | Deletion | |
1 | 8p21-p23 | 0.165-28.624 | Deletion | |
1 | 9p11-p24 | 0.047-47.203 | Deletion | |
1 | 12p11-p13 | 0.148-34.856 | Deletion | |
1 | 12q12-q13 | 38.922-52.786 | Deletion | |
1 | 12q13 | 55.311-56.366 | Deletion | |
1 | 12q24 | 124.643-133.779 | Deletion | |
1 | 17p11 | 17.271-21.528 | Deletion | |
1 | 22q11-q12 | 23.704-27.427 | Deletion | |
1 | 22q12 | 27.458-28.964 | Homozygous deletion | MN1, PITPNB, MIR3199-1 MIR3199-2, TTC28 |
1 | 22q12 | 29.055-29.319 | Deletion | |
1 | 22q12 | 29.361-29.607 | Homozygous deletion | ZNRF3, C22orf31, KREMEN1, EMID1 |
1 | 22q12 | 29.835-30.031 | Deletion | |
1 | 22q12 | 30.048-30.111 | Homozygous deletion | NF2 |
1 | 22q12 | 30.112-30.163 | Deletion | |
1 | 22q12 | 30.391-30.438 | Deletion | |
1 | 22q12 | 36.162-36.444 | Deletion | |
1 | 22q13 | 45.711-46.280 | Deletion | |
2 | 1p34-p36 | 0.082-42.085 | Deletion | |
2 | 2p23-p25 | 0.015-25.967 | Deletion | |
2 | 3p11-p21 | 46.961-90.494 | Deletion | |
2 | 3q11-q29 | 93.537-197.896 | Gain | |
2 | 6q11-q27 | 61.885-170.919 | Deletion | |
2 | 8q11-q24 | 46.846-146.293 | Gain | |
2 | Chromosome 10 | 0.082-135.523 | Gain | |
2 | Chromosome 14 | 18.398-107.288 | Copy number neutral loss of heterozygosity | |
2 | Chromosome 16 | 0.087-90.170 | Gain | |
2 | 17p11-p13 | 0.007-17.179 | Deletion | |
2 | 17p11 | 17.231-22.261 | Gain | |
2 | 17q11 | 25.264-27.505 | Deletion | |
2 | Chromosome 18 | 0.028-78.015 | Deletion | |
2 | 22p11-q13 | 14.676-38.206 | Deletion | |
2 | 22q13 | 47.241-51.667 | Gain |
Human Feb. 2009 (GRCh37/hg19) Assembly