Table 5.
Number of significant SNPs and their mean effect at various significance levels
| FDR* | FDR < 0.1 | P < 0.001 | P < 0.01 | P < 0.05 | |
|---|---|---|---|---|---|
| BF |
0 |
0 |
52 (2.53) |
410 (1.75) |
1986 (1.16) |
| BIF |
0 |
0 |
54 (3.19) |
433 (2.17) |
1971 (1.44) |
| HCW |
7 (4.90) |
8 (4.80) |
56 (3.06) |
451 (1.85) |
2084 (1.22) |
| REA |
0 |
0 |
45 (2.63) |
446 (1.78) |
2060 (1.19) |
| MRB |
0 |
0 |
34 (2.68) |
391 (1.73) |
1752 (1.16) |
| LM7D |
0 |
0 |
55 (3.03) |
421 (1.98) |
2004 (1.30) |
| BDFR |
0 |
0 |
52 (2.60) |
392 (1.80) |
1898 (1.19) |
| BNR |
0 |
0 |
53 (2.68) |
417 (1.83) |
1955 (1.21) |
| INFR |
0 |
0 |
59 (2.54) |
462 (1.72) |
2157 (1.14) |
| LNR |
0 |
0 |
27 (2.63) |
392 (1.69) |
1864 (1.15) |
| SQFR |
0 |
0 |
47 (2.39) |
408 (1.66) |
1786 (1.12) |
| TLFR | 0 | 0 | 45 (2.51) | 426 (1.67) | 1988 (1.12) |
* Calculated FDR threshold; Values in the parentheses are average size of SNP effect as proportion of phenotypic variance.