Figure 2.
Risk score profiling results using the PGC schizophrenia results as the discovery set and the Sweden data as the testing set. The x-axis shows ten P value thresholds (PT = 10−4, 10−3, …, 1). The y-axis is the Nagelkerke pseudo R2, the proportion of variance in case-control status explained by the risk score profile. The number atop each vertical bar is the P value for the capacity of the risk score profile to predict case-control status for that PT.